chr6 : 26,243,607 26,244,004
397 bp 49 TFs 4 linked genes
This 397 bp open chromatin element is linked to 4 target genes and is bound by 49 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
H4C6 3.2 kb Proximal Proximity
H3C7 6.6 kb Proximal Proximity
H2BC9 7.6 kb Proximal Proximity
H1-3 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:26,238,607 – 26,249,004
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 56 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 124 bp overlap
ATF2 4 datasets
ChIP HEK293 ENCFF194VKZ 153 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 78 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 118 bp overlap
ChIP K562 ENCFF139ZZG 168 bp overlap
BRD4 3 datasets
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 277 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 200 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 256 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 234 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 62 bp overlap
CREB1 3 datasets
ChIP LNCaP GSE63034.CREB1.LNCaP 59 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 131 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 60 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 124 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 146 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 329 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 378 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 207 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 281 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 230 bp overlap
FOSL1 1 dataset
ChIP HCT116 ENCFF540ZXN 149 bp overlap
FOXA1 5 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 69 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 214 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 273 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 221 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 288 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 397 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 236 bp overlap
ChIP DE DE-FOXA2-1 397 bp overlap
ChIP DE DE-FOXA2-2 397 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 331 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 192 bp overlap
ChIP DE DE-GATA4-1 397 bp overlap
ChIP DE DE-GATA4-2 397 bp overlap
ChIP foregut GSE117136.GATA4.foregut 380 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 397 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 323 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 397 bp overlap
ChIP DE DE-GATA6-2 397 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 397 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 397 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 397 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 397 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
ChIP foregut GSE117136.GATA6.foregut 397 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 368 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 390 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 349 bp overlap
HNF4A 6 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 221 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 66 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 146 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 100 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 173 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 104 bp overlap
HOXB13 1 dataset
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 142 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 305 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 181 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 78 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 190 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 325 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 302 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 397 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 172 bp overlap
POLR2A 5 datasets
ChIP Peyer's patch ENCFF767HVN 52 bp overlap
ChIP transverse colon ENCFF098HBD 307 bp overlap
ChIP transverse colon ENCFF193UMS 253 bp overlap
ChIP transverse colon ENCFF607LKE 243 bp overlap
ChIP transverse colon ENCFF610RWV 160 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 80 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 212 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 122 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 312 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 397 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 397 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 193 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 367 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 292 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 397 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 222 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 397 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 269 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 138 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 78 bp overlap
ZFP42 1 dataset
ChIP HEK293 GSE76494.ZFP42.HEK293 183 bp overlap
ZNF18 1 dataset
ChIP HEK293 GSE76494.ZNF18.HEK293 129 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 139 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 140 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 182 bp overlap