chr5 : 161,850,561 161,850,857
296 bp 45 TFs 1 linked gene
This 296 bp open chromatin element is linked to GABRA1 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GABRA1 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:161,845,561 – 161,855,857
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
ATF3 1 dataset
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
ATF7 1 dataset
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 147 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 132 bp overlap
CREM 1 dataset
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
CTCF 2 datasets
ChIP neural ENCSR822CEA.CTCF.neural 296 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 244 bp overlap
Creb5 1 dataset
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 296 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOS::JUN 1 dataset
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
JUN 5 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 296 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 296 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 296 bp overlap
RARB 1 dataset
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
RARG 1 dataset
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 163 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 182 bp overlap