chr5 : 138,133,089 138,133,415
326 bp 34 TFs 1 linked gene
This 326 bp open chromatin element is linked to NME5 and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NME5 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:138,128,089 – 138,138,415
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K562 ENCFF343XWA 290 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 288 bp overlap
CTCF 128 datasets
ChIP 22Rv1 ENCFF466OXN 139 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 326 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 326 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 77 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 124 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 215 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 162 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 93 bp overlap
ChIP A549 ENCFF182TCQ 207 bp overlap
ChIP AG04449 ENCFF248MBD 180 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 326 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 92 bp overlap
ChIP BJ ENCFF434HEC 248 bp overlap
ChIP C4-2B ENCFF821XVN 186 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 96 bp overlap
ChIP Caco-2 ENCFF934QYS 190 bp overlap
ChIP Calu3 ENCFF526MDS 316 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 186 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 52 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 130 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 77 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 91 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 51 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12864 ENCFF357DQE 233 bp overlap
ChIP GM12878 ENCFF485TGR 205 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 179 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 326 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 326 bp overlap
ChIP GM20000 ENCFF217HWJ 154 bp overlap
ChIP GM20000 ENCFF218HKS 153 bp overlap
ChIP GM23338 ENCFF772DML 192 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 87 bp overlap
ChIP H1 ENCFF414GZI 202 bp overlap
ChIP H1 ENCFF764RHO 205 bp overlap
ChIP H54 ENCFF255TVO 210 bp overlap
ChIP H9 ENCFF152GTF 97 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 139 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 80 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 63 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 120 bp overlap
ChIP HFFc6 ENCFF005CJI 159 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 302 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 326 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 326 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 192 bp overlap
ChIP K562 ENCFF111MGE 206 bp overlap
ChIP K562 ENCFF400DFR 232 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 102 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 203 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 197 bp overlap
ChIP NCI-H929 ENCFF305JAB 298 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 326 bp overlap
ChIP NPC GSE115407.CTCF.NPC 67 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 266 bp overlap
ChIP Panc1 ENCFF056JQX 326 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 50 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 105 bp overlap
ChIP RWPE1 ENCFF200GQF 53 bp overlap
ChIP RWPE1 ENCFF200GQF 53 bp overlap
ChIP RWPE2 ENCFF911IEE 232 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 83 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 71 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 54 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 55 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 94 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 71 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 326 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 106 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 78 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 134 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 115 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 326 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 143 bp overlap
ChIP VCaP ENCFF858YQT 161 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 61 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 68 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 95 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 50 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 94 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 88 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 103 bp overlap
ChIP brain ENCFF163BBN 153 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 238 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 52 bp overlap
ChIP chondrocyte ENCFF134ORZ 326 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 128 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 326 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 326 bp overlap
ChIP coronary-artery ENCSR175FLL.CTCF.coronary-artery 157 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 55 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 72 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 239 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 113 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 167 bp overlap
ChIP esophagus muscularis mucosa ENCFF421MEH 61 bp overlap
ChIP esophagus squamous epithelium ENCFF884RED 81 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 226 bp overlap
ChIP gastrocnemius-medialis ENCSR071XWO.CTCF.gastrocnemius-medialis 84 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 326 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 326 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 124 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 193 bp overlap
ChIP heart right ventricle ENCFF979TCT 62 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 145 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 134 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 203 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 326 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 55 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 146 bp overlap
ChIP natural killer cell ENCFF517SNI 135 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 116 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 77 bp overlap
ChIP neural cell ENCFF335ADI 90 bp overlap
ChIP neuron GSE115407.CTCF.neuron 169 bp overlap
ChIP prostate gland ENCFF462RCQ 222 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 326 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 141 bp overlap
ChIP spleen ENCFF604DQF 192 bp overlap
ChIP spleen ENCSR482PMN.CTCF.spleen 80 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 133 bp overlap
ChIP transverse colon ENCFF046SHF 67 bp overlap
ChIP vagina ENCFF026NYX 100 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 214 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 326 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 160 bp overlap
HDAC2 2 datasets
ChIP K562 ENCFF919OMP 326 bp overlap
ChIP K562 ENCFF919OMP 242 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 72 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 326 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 326 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 206 bp overlap
NBN 3 datasets
ChIP GM12878 ENCFF213ZNN 326 bp overlap
ChIP GM12878 ENCFF213ZNN 230 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 54 bp overlap
NCOA1 1 dataset
ChIP K562 ENCFF962VHQ 309 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 285 bp overlap
RAD21 24 datasets
ChIP A549 ENCFF047SFC 147 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 296 bp overlap
ChIP H1 ENCFF698EWO 202 bp overlap
ChIP H1 ENCFF967OJF 184 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 190 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 326 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 54 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 326 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 326 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 326 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 326 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 69 bp overlap
ChIP K562 ENCFF169SQI 163 bp overlap
ChIP LoVo_PHASES GSE51290.RAD21.LoVo_PHASES 326 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 61 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 137 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 62 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 117 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 122 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 51 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 326 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 59 bp overlap
ChIP neural cell ENCFF564MOT 82 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 78 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 246 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
SMARCA5 1 dataset
ChIP K562 ENCFF936KHY 309 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 156 bp overlap
ChIP DKO GSE131606.SMC1.DKO 63 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 104 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 147 bp overlap
SMC3 3 datasets
ChIP GP5D GSE51234.SMC3.GP5D 326 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 56 bp overlap
ChIP neural cell ENCFF795YGY 80 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SREBP2 1 dataset
ChIP monocyte GSE129202.SREBP2.monocyte 326 bp overlap
STAG2 2 datasets
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 100 bp overlap
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 66 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF313QBQ 97 bp overlap
TRIM25 2 datasets
ChIP K562 ENCFF376TLP 326 bp overlap
ChIP K562 ENCFF786UTW 326 bp overlap
ZC3H8 2 datasets
ChIP K562 ENCFF495URH 326 bp overlap
ChIP K562 ENCFF495URH 136 bp overlap
ZNF24 5 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 58 bp overlap
ChIP K562 ENCFF497GLV 84 bp overlap
ChIP K562 ENCFF615YYW 326 bp overlap
ChIP K562 ENCFF615YYW 143 bp overlap
ChIP K562 ENCFF877JCX 107 bp overlap
ZNF384 3 datasets
ChIP GM12878 ENCFF229VSP 181 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 92 bp overlap
ChIP K562 ENCFF365NXQ 217 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap