chr5 : 120,228,418 – 120,229,180
762 bp 47 TFs 0 linked genes
This 762 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:120,223,418 – 120,234,180
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 138 bp overlap
ATF6 2 datasets
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
Motif ES_0h ES_0h-ATF6_MA1466.2 13 bp overlap
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 131 bp overlap
CTCF 154 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 332 bp overlap
ChIP AG04450 ENCFF116DJL 297 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 167 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 284 bp overlap
ChIP Calu3 ENCFF526MDS 481 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 144 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 141 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 155 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 278 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 378 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 155 bp overlap
ChIP GM06990 ENCFF471OQT 297 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 152 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 156 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 121 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 182 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 218 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 199 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 168 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 193 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 132 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 196 bp overlap
ChIP GM12874 ENCFF942MTD 261 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 138 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 115 bp overlap
ChIP GM23338 ENCFF531QOI 156 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 605 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 81 bp overlap
ChIP H9 ENCFF152GTF 295 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 203 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 233 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 321 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 281 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 171 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 249 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 383 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 356 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 243 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 350 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 237 bp overlap
ChIP HCT116 ENCFF209YMI 285 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 115 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 235 bp overlap
ChIP HFF-Myc ENCFF680WYR 377 bp overlap
ChIP HFFc6 ENCFF005CJI 565 bp overlap
ChIP HFFc6 ENCFF005CJI 487 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 238 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 106 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 67 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 223 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 284 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 284 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 319 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 255 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 323 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 425 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 435 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 290 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 98 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 278 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 355 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 255 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 118 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 139 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 174 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 175 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 211 bp overlap
ChIP Jurkat GSE130140.CTCF.Jurkat 148 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 107 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 97 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 129 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 98 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 157 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 120 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 104 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 207 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 224 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 184 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 155 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 261 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 273 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 258 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 179 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 100 bp overlap
ChIP MM.1S ENCFF869JMQ 421 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 273 bp overlap
ChIP NCI-H929 ENCFF305JAB 132 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 560 bp overlap
ChIP OCI-LY1 ENCFF455ESK 451 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 391 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 211 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 171 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 238 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 156 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 412 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 286 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 243 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 161 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 161 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 216 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 162 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 320 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 283 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 249 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 231 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 261 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 145 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 180 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 128 bp overlap
ChIP WI38 ENCFF841AXJ 317 bp overlap
ChIP WTC11 ENCFF658QVH 485 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 192 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 180 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 265 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 271 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 193 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 151 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 150 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 282 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 371 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 312 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 128 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 139 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 192 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 127 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 152 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 294 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 212 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 106 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 307 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 424 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 361 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 237 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 51 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 392 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 189 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
Hic1 3 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
JUN 1 dataset
ChIP BT-549 GSE71976.JUN.BT-549 101 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
NR1I2 2 datasets
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
Motif DE_36h DE_36h-NR1I2_MA1533.2 15 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 52 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 172 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 170 bp overlap
RARA::RXRA 2 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
RARA::RXRG 2 datasets
Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_36h DE_36h-RARARXRG_MA1149.2 17 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 259 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 259 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 259 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 195 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 284 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 218 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 218 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Wt1 2 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZNF319 1 dataset
ChIP K-562 ENCSR231PDA.ZNF319.K-562 62 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 112 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
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