chr5 : 98,141,300 – 98,141,992
692 bp 61 TFs 0 linked genes
This 692 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,136,300 – 98,146,992
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Bcl11B 2 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 365 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 142 bp overlap
FOXA1 2 datasets
Motif DE_36h DE_36h-FOXA1_MA0148.5 8 bp overlap
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 611 bp overlap
ChIP DE DE-FOXA2-2 575 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
FOXA3 2 datasets
Motif DE_36h DE_36h-FOXA3_MA1683.2 7 bp overlap
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXD1 2 datasets
Motif DE_36h DE_36h-FOXD1_MA0031.2 7 bp overlap
Motif DE_48h DE_48h-FOXD1_MA0031.2 7 bp overlap
FOXF2 2 datasets
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
Motif DE_48h DE_48h-FOXF2_MA0030.2 9 bp overlap
FOXG1 2 datasets
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
FOXI1 2 datasets
Motif DE_36h DE_36h-FOXI1_MA0042.2 7 bp overlap
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXK1 2 datasets
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
FOXK2 2 datasets
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
FOXL1 2 datasets
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
FOXN3 2 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
FOXO4 2 datasets
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
FOXO6 2 datasets
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
FOXP1 2 datasets
Motif DE_36h DE_36h-FOXP1_MA0481.4 7 bp overlap
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP2 2 datasets
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
FOXP3 2 datasets
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
FOXP4 2 datasets
Motif DE_36h DE_36h-FOXP4_MA2117.1 7 bp overlap
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
FOXS1 2 datasets
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap
Foxf1 2 datasets
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Foxj2 2 datasets
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Foxj3 2 datasets
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Foxo1 2 datasets
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Foxo3 2 datasets
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
Foxq1 2 datasets
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 178 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 651 bp overlap
ChIP DE DE-GATA4-2 692 bp overlap
ChIP foregut GSE117136.GATA4.foregut 401 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 646 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 554 bp overlap
ChIP DE DE-GATA6-2 673 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 585 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 519 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 366 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 628 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 528 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 502 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 460 bp overlap
ChIP foregut GSE117136.GATA6.foregut 511 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 504 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS3 2 datasets
Motif DE_36h DE_36h-MEIS3_MA0775.2 7 bp overlap
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
MYB 2 datasets
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Nfat5 2 datasets
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 447 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 276 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 458 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 260 bp overlap
SOX10 4 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 490 bp overlap
SOX21 2 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SOX4 2 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Sox11 2 datasets
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Sox6 4 datasets
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 455 bp overlap
ZNF136 1 dataset
Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap
ZNF24 2 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF382 2 datasets
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
ZNF684 2 datasets
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
ZSCAN16 2 datasets
Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
Huangfu Lab · Publications · Resources · Contact