chr1 : 94,538,349 – 94,538,533
184 bp 38 TFs 2 linked genes
This 184 bp open chromatin element is linked to F3 and ENSG00000288736 and is bound by 38 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
F3 3.2 kb Proximal Proximity
ENSG00000288736 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:94,533,349 – 94,543,533
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP ERP003503.AR.LNCaP 91 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 184 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 184 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 184 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 128 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.BRD4.SUM159PT_300nMJQ1_24h 167 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 184 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 182 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 184 bp overlap
CHD1 2 datasets
ChIP IMR-90 ENCFF921SVK 178 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 184 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 92 bp overlap
CTCF 98 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 184 bp overlap
ChIP AG04449 ENCFF248MBD 161 bp overlap
ChIP AG04450 ENCFF116DJL 184 bp overlap
ChIP AG09319 ENCFF401ZTN 184 bp overlap
ChIP BJ ENCFF434HEC 184 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 173 bp overlap
ChIP GM23338 ENCFF772DML 173 bp overlap
ChIP H1 ENCFF414GZI 184 bp overlap
ChIP H1 ENCFF764RHO 184 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 183 bp overlap
ChIP HFF-Myc ENCFF680WYR 184 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 111 bp overlap
ChIP IMR-90 ENCFF887MRH 184 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 154 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 167 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 81 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 169 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 104 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 155 bp overlap
ChIP ascending aorta ENCFF451CCT 184 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 179 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 184 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 184 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 184 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 184 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 150 bp overlap
ChIP brain ENCFF163BBN 184 bp overlap
ChIP brain ENCFF685VRG 184 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 184 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 174 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 184 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 168 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 146 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 179 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 127 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 175 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 168 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 144 bp overlap
ChIP endodermal cell ENCFF471YCZ 184 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 183 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 184 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 184 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 133 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 182 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 184 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 184 bp overlap
ChIP fibroblast of lung ENCFF084DUH 184 bp overlap
ChIP fibroblast of lung ENCFF356FDN 184 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 180 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 184 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 170 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 184 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 158 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 141 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 175 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 184 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 177 bp overlap
ChIP fibroblast_LUNG ENCSR000ANO.CTCF.fibroblast_LUNG 170 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 167 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 184 bp overlap
ChIP fibroblast_MAMMARY ENCSR000DUU.CTCF.fibroblast_MAMMARY 148 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 149 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 118 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 173 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 184 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 184 bp overlap
ChIP gastroesophageal sphincter ENCFF125ESZ 96 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 184 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 184 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 184 bp overlap
ChIP heart left ventricle ENCFF354HOQ 184 bp overlap
ChIP heart left ventricle ENCFF842XRG 183 bp overlap
ChIP hepatocyte ENCFF263BLJ 184 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 184 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 111 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 117 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 164 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 184 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 184 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 149 bp overlap
ChIP myotube ENCFF981UHL 184 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 133 bp overlap
ChIP nephron ENCFF411ACD 184 bp overlap
ChIP nephron ENCFF589HXU 184 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 184 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 184 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 184 bp overlap
ChIP ovary ENCSR548DDS.CTCF.ovary 184 bp overlap
ChIP prostate gland ENCFF655GBO 184 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 164 bp overlap
ChIP prostate_gland ENCSR829HTO.CTCF.prostate_gland 146 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 184 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 184 bp overlap
ChIP right atrium auricular region ENCFF696NTN 184 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 184 bp overlap
ChIP tibial nerve ENCFF665IWH 184 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 117 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 122 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 184 bp overlap
E2F1 2 datasets
ChIP HMEC-1 GSE62425.E2F1.HMEC-1 184 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 184 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 171 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 184 bp overlap
HMGB2 1 dataset
ChIP IMR-90_senescent GSE98245.HMGB2.IMR-90_senescent 184 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 176 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 184 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 165 bp overlap
JUN 3 datasets
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 184 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 169 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 184 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 184 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 133 bp overlap
MED1 1 dataset
ChIP MOLM-14 GSE65138.MED1.MOLM-14 184 bp overlap
MYBL2 1 dataset
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 184 bp overlap
NCAPH2 4 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 157 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 184 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 184 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 184 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 184 bp overlap
POLR2A 4 datasets
ChIP HeLa-S3 ENCFF455YYQ 184 bp overlap
ChIP HeLa-S3 ENCFF773DNG 115 bp overlap
ChIP IMR-90 ENCFF672YWV 184 bp overlap
ChIP sigmoid colon ENCFF754JQR 184 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 184 bp overlap
ChIP H1 ENCFF967OJF 184 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 184 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 157 bp overlap
RBPJ 1 dataset
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 184 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 184 bp overlap
RXRA 1 dataset
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 116 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 96 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 184 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 172 bp overlap
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 184 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 184 bp overlap
SMC3 2 datasets
ChIP IMR-90 ENCFF627LON 184 bp overlap
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 184 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 183 bp overlap
SSRP1 1 dataset
ChIP hiF-T GSE98758.SSRP1.hiF-T 184 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 164 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 169 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 184 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 105 bp overlap
ZMYND11 1 dataset
ChIP HeLa GSE51672.ZMYND11.HeLa 172 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 94 bp overlap
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