chr1 : 94,239,398 – 94,240,097
699 bp 46 TFs 2 linked genes
This 699 bp open chromatin element is linked to ARHGAP29 and ARHGAP29-AS1 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARHGAP29 1.8 kb Proximal Proximity
ARHGAP29-AS1 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:94,234,398 – 94,245,097
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 262 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 238 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 167 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 123 bp overlap
BRD4 7 datasets
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 194 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 380 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 401 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 288 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 199 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 81 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 431 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 227 bp overlap
CTCF 1 dataset
ChIP B cell ENCFF500PZO 519 bp overlap
DPF2 1 dataset
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 699 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 375 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 77 bp overlap
FOS 2 datasets
ChIP endothelial cell of umbilical vein ENCFF415XBG 291 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 268 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 150 bp overlap
ChIP HCT116 ENCFF540ZXN 330 bp overlap
FOSL2 2 datasets
ChIP SK-N-SH ENCFF127ZDW 263 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 114 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 452 bp overlap
ChIP DE DE-FOXA2-2 356 bp overlap
GATA2 7 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 141 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 323 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 216 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 277 bp overlap
GATA3 3 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 367 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 294 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 233 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 287 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 571 bp overlap
ChIP DE DE-GATA4-2 627 bp overlap
ChIP foregut GSE117136.GATA4.foregut 298 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 170 bp overlap
ChIP DE DE-GATA6-1 474 bp overlap
ChIP DE DE-GATA6-2 474 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 535 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 670 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 518 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 571 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 664 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 596 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 502 bp overlap
ChIP foregut GSE117136.GATA6.foregut 304 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 334 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 165 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 241 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 168 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 618 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 363 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 129 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 204 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 328 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 291 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 153 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 458 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 273 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 197 bp overlap
PAF1 2 datasets
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 165 bp overlap
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 293 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 165 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 253 bp overlap
POLR2A 2 datasets
ChIP HCT116 ENCFF508RDJ 54 bp overlap
ChIP HCT116 ENCFF508RDJ 335 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 332 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE121355.RAD21.HCT-116 134 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 125 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 201 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 272 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 353 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 430 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 373 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 103 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 159 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 439 bp overlap
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 699 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 366 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 365 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 395 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 220 bp overlap
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 151 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 305 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 415 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 231 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 269 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 299 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 370 bp overlap
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