chr4 : 179,728,120 – 179,728,704
584 bp 61 TFs 0 linked genes
This 584 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:179,723,120 – 179,733,704
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
Arid5a 1 dataset
Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 235 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FOXA1 1 dataset
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 493 bp overlap
ChIP DE DE-FOXA2-2 410 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 415 bp overlap
ChIP DE DE-GATA4-2 584 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 455 bp overlap
ChIP DE DE-GATA6-2 584 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 347 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 474 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 418 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 363 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Hand1 2 datasets
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
JAZF1 1 dataset
ChIP WTC11 ENCFF958GRP 277 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 515 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 410 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 294 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 247 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 584 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 511 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 371 bp overlap
ChIP hESC GSE18292.NANOG.hESC 153 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 352 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 236 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 2 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif DE_48h DE_48h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif DE_48h DE_48h-SCRT1_MA0743.3 10 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 584 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 584 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 584 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 584 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 584 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 584 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 584 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 151 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 331 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif DE_48h DE_48h-SOX15_MA1152.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 242 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SRF 1 dataset
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 230 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Huangfu Lab · Publications · Resources · Contact