chr1 : 85,587,943 85,588,301
358 bp 36 TFs 1 linked gene
This 358 bp open chromatin element is linked to CCN1 and is bound by 36 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CCN1 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:85,582,943 – 85,593,301
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 268 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD2.MV4-11_IBET151_50nM 141 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 236 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 264 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 331 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 358 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 245 bp overlap
ChIP BLaER1 ENCFF335XTP 274 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 119 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 275 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 318 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 333 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 145 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 131 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 238 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 226 bp overlap
HMGB2 1 dataset
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 303 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 91 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 151 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 180 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 119 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 102 bp overlap
MYC 4 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 211 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 226 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 75 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 103 bp overlap
MYCN 5 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 166 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 200 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 181 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 166 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.MYCN.SHEP-21N_DOX_24H 187 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 294 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 150 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 188 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 182 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 132 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 295 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 176 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 261 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 269 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 242 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 168 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 221 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 186 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 186 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 164 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 111 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 144 bp overlap
YY1 2 datasets
ChIP HEK293T_control GSE128106.YY1.HEK293T_control 214 bp overlap
ChIP WA01 GSE39096.YY1.WA01 150 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 151 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZNF281 2 datasets
ChIP HEK293 GSE76494.ZNF281.HEK293 157 bp overlap
ChIP WTC11 ENCFF551GAV 279 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 79 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 79 bp overlap