chr4 : 173,782,600 – 173,783,016

416 bp 85 TFs 0 linked genes

This 416 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

85 transcription factors

ATRX 1 dataset

ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 98 bp overlap

CDX2 1 dataset

ChIP COLO-320 GSE30026.CDX2.COLO-320 53 bp overlap

CDX4 1 dataset

Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap

CEBPD 1 dataset

Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap

DUXA 2 datasets

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

ELF1 1 dataset

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 242 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 357 bp overlap

ERF::FIGLA 1 dataset

Motif DE_36h DE_36h-ERFFIGLA_MA1934.2 13 bp overlap

ERF::FOXI1 1 dataset

Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap

ERF::FOXO1 1 dataset

Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap

ETV2 1 dataset

Motif DE_36h DE_36h-ETV2_MA0762.2 9 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_36h DE_36h-ETV5FIGLA_MA1945.2 14 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_36h DE_36h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 348 bp overlap

ChIP DE DE-FOXA2-2 318 bp overlap

FOXD3 2 datasets

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap

GATA4 1 dataset

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 383 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 272 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 379 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 212 bp overlap

GRHL2 1 dataset

Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap

HAND2 2 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 311 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 181 bp overlap

HOXA10 1 dataset

Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap

HOXB9 1 dataset

Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap

HOXC10 1 dataset

Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap

HOXC13 3 datasets

Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap

Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap

HOXC9 1 dataset

Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap

HOXD10 1 dataset

Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap

HOXD11 1 dataset

Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap

HOXD12 1 dataset

Motif DE_36h DE_36h-HOXD12_MA0873.2 10 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap

Hoxa11 1 dataset

Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 295 bp overlap

KLF17 2 datasets

Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap

Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap

MAFK 1 dataset

ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 113 bp overlap

MEF2A 1 dataset

Motif DE_36h DE_36h-MEF2A_MA0052.5 10 bp overlap

MZF1 4 datasets

Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap

Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap

ChIP HEK293 ENCFF683ZWN 370 bp overlap

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 334 bp overlap

NANOG 1 dataset

ChIP hESC GSE18292.NANOG.hESC 205 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 380 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 384 bp overlap

NR1D2 2 datasets

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 257 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 212 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 240 bp overlap

ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 268 bp overlap

PHOX2A 2 datasets

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 3 datasets

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 263 bp overlap

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 413 bp overlap

PKNOX1 2 datasets

ChIP HEK293T ENCFF174WDB 391 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 386 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 278 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap

POU3F3 2 datasets

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap

PRDM6 1 dataset

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 230 bp overlap

PROP1 2 datasets

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

RREB1 2 datasets

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap

SIX1 1 dataset

Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap

SIX2 3 datasets

Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap

ChIP HEK GSE73865.SIX2.HEK 209 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 142 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 416 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 364 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 326 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 416 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 239 bp overlap

SMARCA2 1 dataset

ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 355 bp overlap

SMARCA4 2 datasets

ChIP NGP GSE134626.SMARCA4.NGP 187 bp overlap

ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 271 bp overlap

SMARCC1 2 datasets

ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 317 bp overlap

ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 173 bp overlap

SMC1A-B 2 datasets

ChIP TC-32 GSE115250.SMC1A-B.TC-32 90 bp overlap

ChIP TC-32 GSE115250.SMC1A-B.TC-32 184 bp overlap

SPDEF 1 dataset

Motif DE_36h DE_36h-SPDEF_MA0686.2 10 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

Spi1 2 datasets

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 183 bp overlap

TAL1 1 dataset

ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 179 bp overlap

TCF7L1 1 dataset

Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_36h DE_36h-TFAP4FLI1_MA1967.2 14 bp overlap

TFCP2 1 dataset

Motif DE_36h DE_36h-TFCP2_MA1968.2 9 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 281 bp overlap

ZIM3 1 dataset

Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap

ZNF75A 1 dataset

Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap

ZNF75D 1 dataset

Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap

ZNF766 2 datasets

Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap

ChIP HEK293T GSE78099.ZNF766.HEK293T 111 bp overlap

ZNF778 1 dataset

ChIP HEK293 GSE76494.ZNF778.HEK293 157 bp overlap

ZSCAN5C 1 dataset

ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 216 bp overlap