chr4 : 168,309,851 – 168,310,245
394 bp 40 TFs 1 linked gene
This 394 bp open chromatin element is linked to DDX60 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DDX60 8.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:168,304,851 – 168,315,245
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 7 datasets
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 137 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 221 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 198 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 211 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 369 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 209 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 134 bp overlap
ASCL1 1 dataset
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 124 bp overlap
BCL11A 2 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 203 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 144 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 175 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 317 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 215 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 278 bp overlap
FOXA1 12 datasets
ChIP LNCaP GSE52725.FOXA1.LNCaP 136 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 185 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 264 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 212 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 215 bp overlap
ChIP liver ENCFF537QZV 281 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 265 bp overlap
ChIP liver ERP002306.FOXA1.liver 185 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 214 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 171 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 119 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 338 bp overlap
ChIP DE DE-FOXA2-2 364 bp overlap
ChIP liver ENCFF888VJF 296 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 266 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 229 bp overlap
FOXL2 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 272 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 166 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 252 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 339 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 257 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 154 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 225 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 216 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 149 bp overlap
ChIP erythroblast ENCFF867JAR 193 bp overlap
ChIP erythroblast ENCFF867JAR 365 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 384 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 217 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 264 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 320 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 287 bp overlap
ChIP SK-N-SH ENCFF764OZD 352 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 260 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 217 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 113 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 290 bp overlap
ChIP DE DE-GATA4-2 387 bp overlap
ChIP G296S GSE85628.GATA4.G296S 253 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 253 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 240 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 324 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 179 bp overlap
ChIP DE DE-GATA6-1 292 bp overlap
ChIP DE DE-GATA6-2 394 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 262 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 255 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 321 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 213 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 347 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 187 bp overlap
HOXB13 1 dataset
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 168 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 282 bp overlap
ChIP SK-N-SH ENCFF285GEQ 389 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 178 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 120 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 217 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 186 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 195 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 264 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 163 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 217 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 192 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 207 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 223 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 190 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 198 bp overlap
RAD21 1 dataset
ChIP liver ENCFF522JHE 323 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 209 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 384 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 285 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 143 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 394 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 235 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 252 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 254 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 224 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 279 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 193 bp overlap
ChIP SK-N-SH ENCFF270OWF 394 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 177 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 177 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 373 bp overlap
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