chr1 : 84,401,256 84,401,634
378 bp 38 TFs 0 linked genes
This 378 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:84,396,256 – 84,406,634
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 98 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 83 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 199 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 142 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 196 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 190 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 252 bp overlap
CTCF 2 datasets
ChIP Panc1 ENCFF056JQX 291 bp overlap
ChIP Panc1 ENCFF056JQX 378 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 276 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 134 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 155 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 142 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 165 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 211 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 219 bp overlap
GATA3 1 dataset
ChIP BE2C GSE65664.GATA3.BE2C 237 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 283 bp overlap
ChIP DE DE-GATA4-2 295 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 311 bp overlap
HOXB13 2 datasets
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 107 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 174 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 209 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 241 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 166 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 280 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 274 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 182 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 194 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 176 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 220 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 204 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 186 bp overlap
REST 1 dataset
ChIP PFSK-1 ENCFF845VHA 200 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 174 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 280 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 288 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 171 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 282 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 148 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 235 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 235 bp overlap
ZFP3 3 datasets
ChIP SK-N-SH ENCFF981MBE 370 bp overlap
ChIP SK-N-SH ENCFF981MBE 247 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 378 bp overlap
ZFX 1 dataset
ChIP HCT116 ENCFF324IZY 378 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 154 bp overlap
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 242 bp overlap