chr4 : 135,838,991 – 135,839,222
231 bp 60 TFs 0 linked genes
This 231 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:135,833,991 – 135,844,222
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 137 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 231 bp overlap
BRD4 3 datasets
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 221 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 231 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 231 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 231 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP MCF-7 ENCFF570JPP 207 bp overlap
CTCF 1 dataset
ChIP islet GSE23784.CTCF.islet 158 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 80 bp overlap
DMRT3 1 dataset
Motif DE_12h DE_12h-DMRT3_MA0610.2 7 bp overlap
DPF2 1 dataset
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 222 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 231 bp overlap
ChIP neural cell ENCFF442QNK 231 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 113 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 209 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 231 bp overlap
FOSL1 1 dataset
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 143 bp overlap
FOSL2 9 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 221 bp overlap
ChIP A-549 ENCSR000BQO.FOSL2.A-549 176 bp overlap
ChIP A549 ENCFF195CES 231 bp overlap
ChIP LPS141 GSE111253.FOSL2.LPS141 183 bp overlap
ChIP MCF-7 ENCSR546KCN.FOSL2.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 167 bp overlap
ChIP NPC GSE122631.FOSL2.NPC 213 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 231 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 231 bp overlap
FOXA1 5 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 163 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 127 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 108 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 170 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 148 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 187 bp overlap
ChIP DE DE-FOXA2-1 151 bp overlap
ChIP DE DE-FOXA2-2 148 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 152 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 125 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 231 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 179 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 231 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 231 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 231 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 231 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 130 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 196 bp overlap
JUND 5 datasets
ChIP H1 ENCFF010YXS 231 bp overlap
ChIP H1 ENCFF468JZD 209 bp overlap
ChIP SK-N-SH ENCFF971JKN 226 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 202 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 154 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 182 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 130 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 177 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 118 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 196 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 142 bp overlap
NFE2 1 dataset
ChIP erythroid_R3R4 GSE43625.NFE2.erythroid_R3R4 68 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 122 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 184 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 211 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 170 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 116 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 133 bp overlap
ChIP neural cell ENCFF882LXX 231 bp overlap
RFX1 9 datasets
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 231 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 231 bp overlap
ChIP K562 ENCFF421AVO 231 bp overlap
ChIP K562 ENCFF809XVG 231 bp overlap
ChIP MCF-7 ENCFF782EZS 231 bp overlap
ChIP MCF-7 ENCFF973QAD 231 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 231 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 5 datasets
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
ChIP HeLa-S3 ENCFF703XPB 231 bp overlap
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 152 bp overlap
ChIP MCF-7 ENCFF983ILY 191 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 231 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 203 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 203 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 174 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 164 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 231 bp overlap
SMARCA4 15 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 225 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 199 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 230 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 215 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 173 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 180 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 197 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 227 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 231 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 187 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 231 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 231 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 231 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 231 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
SMARCB1 5 datasets
ChIP TTC-1240 GSE124903.SMARCB1.TTC-1240 143 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 231 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCB1.TTC-1240_SMARCB1-FL 165 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCB1.TTC-1240_delC 231 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 220 bp overlap
SMARCC1 4 datasets
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 231 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 231 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 183 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 231 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 231 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 118 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 226 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 231 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 218 bp overlap
ZNF143 4 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 106 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 231 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 231 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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