chr4 : 118,881,228 118,881,819
591 bp 44 TFs 1 linked gene
This 591 bp open chromatin element is linked to SYNPO2 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYNPO2 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:118,876,228 – 118,886,819
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 196 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 116 bp overlap
ChIP K562 ENCFF674KTF 159 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 144 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 347 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 489 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 591 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 468 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 329 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 72 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 94 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 83 bp overlap
ChIP K562 ENCFF783ADE 171 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 176 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 143 bp overlap
CTCF 4 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 150 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 260 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 54 bp overlap
Cebpa 12 datasets
ChIP BLaER1 ENCFF031ISE 310 bp overlap
ChIP BLaER1 ENCFF093OYK 106 bp overlap
ChIP BLaER1 ENCFF140EYR 116 bp overlap
ChIP BLaER1 ENCFF234NTO 111 bp overlap
ChIP BLaER1 ENCFF262VBH 183 bp overlap
ChIP BLaER1 ENCFF274GAT 236 bp overlap
ChIP BLaER1 ENCFF335XTP 438 bp overlap
ChIP BLaER1 ENCFF364PUR 135 bp overlap
ChIP BLaER1 ENCFF460KDD 350 bp overlap
ChIP BLaER1 ENCFF508JZF 212 bp overlap
ChIP BLaER1 ENCFF858JKM 144 bp overlap
ChIP BLaER1 ENCFF896HSY 97 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 244 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 167 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 122 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 346 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 259 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 231 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 63 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 185 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 77 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 211 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 337 bp overlap
RAD21 2 datasets
ChIP WA09 GSE105028.RAD21.WA09 171 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 187 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 327 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 273 bp overlap
RUNX1 1 dataset
ChIP keratinocyte GSE98483.RUNX1.keratinocyte 54 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 264 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 125 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 190 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 120 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 234 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 184 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 78 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 242 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 108 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 491 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 404 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE51268.TP53.SaOS-2 177 bp overlap
TP63 2 datasets
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 53 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 92 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 263 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 108 bp overlap
ZNF141 1 dataset
ChIP HEK293T GSE78099.ZNF141.HEK293T 122 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 214 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 383 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 274 bp overlap