chr4 : 92,274,632 – 92,275,690
1,058 bp 67 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to LNCPRESS2 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LNCPRESS2 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:92,269,632 – 92,280,690
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
Bach1::Mafk 1 dataset
Motif DE_48h DE_48h-Bach1Mafk_MA0591.2 12 bp overlap
CTCF 1 dataset
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
EOMES 1 dataset
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 378 bp overlap
GATA1 1 dataset
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
HOXA10 1 dataset
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
HOXD9 1 dataset
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
Hand1 4 datasets
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Motif DE_60h DE_60h-Hand1_MA2123.1 9 bp overlap
Motif DE_72h DE_72h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 3 datasets
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap
Hmx1 1 dataset
Motif DE_72h DE_72h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_72h DE_72h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
IRF3 4 datasets
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
IRF4 4 datasets
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap
Motif DE_60h DE_60h-IRF4_MA1419.2 14 bp overlap
Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap
IRF6 4 datasets
Motif DE_24h DE_24h-IRF6_MA1509.1 9 bp overlap
Motif DE_48h DE_48h-IRF6_MA1509.1 9 bp overlap
Motif DE_60h DE_60h-IRF6_MA1509.1 9 bp overlap
Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap
IRF7 4 datasets
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
Motif DE_60h DE_60h-IRF7_MA0772.2 13 bp overlap
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
IRF8 4 datasets
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
Motif DE_60h DE_60h-IRF8_MA0652.2 13 bp overlap
Motif DE_72h DE_72h-IRF8_MA0652.2 13 bp overlap
IRF9 4 datasets
Motif DE_24h DE_24h-IRF9_MA0653.1 15 bp overlap
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
Motif DE_60h DE_60h-IRF9_MA0653.1 15 bp overlap
Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap
Irf1 4 datasets
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
MAZ 2 datasets
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
PATZ1 1 dataset
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 212 bp overlap
ChIP GM23338 ENCFF450WCS 280 bp overlap
PRDM9 1 dataset
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
SMAD2 3 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SP1 1 dataset
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 4 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 330 bp overlap
Wt1 3 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZBTB32 4 datasets
Motif DE_24h DE_24h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB32_MA1580.1 10 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN5 1 dataset
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 2 datasets
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF157 1 dataset
Motif DE_72h DE_72h-ZNF157_MA2331.1 21 bp overlap
ZNF184 1 dataset
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF281 3 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF416 1 dataset
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF530 3 datasets
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF652 1 dataset
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF680 1 dataset
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZNF707 1 dataset
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
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