chr1 : 73,401,472 – 73,402,159
687 bp 45 TFs 0 linked genes
This 687 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:73,396,472 – 73,407,159
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 298 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 220 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 235 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 220 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
CTCF 119 datasets
ChIP 22Rv1 ENCFF466OXN 657 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 378 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 348 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 313 bp overlap
ChIP 81-3 ERP002246.CTCF.81-3 130 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 298 bp overlap
ChIP A673 ENCFF123WOM 441 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 167 bp overlap
ChIP C4-2B ENCFF821XVN 687 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 153 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 247 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 131 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 130 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 115 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 153 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 106 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 110 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 431 bp overlap
ChIP GM23338 ENCFF531QOI 207 bp overlap
ChIP GM23338 ENCFF772DML 175 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 391 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 360 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 174 bp overlap
ChIP H9 ENCFF152GTF 305 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 235 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 244 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 230 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 254 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 296 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 276 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 166 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 296 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 285 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 126 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 174 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 196 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 201 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 193 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 194 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 315 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 385 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 180 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 395 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 218 bp overlap
ChIP Loucy ENCFF359TVQ 167 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 359 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 392 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 131 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 296 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 247 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 192 bp overlap
ChIP NCI-H929 ENCFF305JAB 517 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 253 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 251 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 200 bp overlap
ChIP PC-3 ENCFF487TUI 485 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 340 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 196 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 156 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 106 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 100 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 167 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 162 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 169 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 226 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 185 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 280 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 164 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 146 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 131 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 181 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 111 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 189 bp overlap
ChIP endodermal cell ENCFF471YCZ 311 bp overlap
ChIP endodermal cell ENCFF471YCZ 336 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 126 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 253 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 331 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 201 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 227 bp overlap
ChIP hESC GSE20650.CTCF.hESC 149 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 270 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 185 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 244 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 122 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 379 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 266 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 254 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 266 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 120 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 229 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 272 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 187 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 221 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 231 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 221 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 273 bp overlap
ChIP islet ERP004003.CTCF.islet 179 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 197 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 146 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 229 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 223 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 177 bp overlap
ChIP neural progenitor cell ENCFF420RBO 228 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 320 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 273 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 311 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 501 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 157 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 315 bp overlap
Ddit3::Cebpa 1 dataset
Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 246 bp overlap
ERF::SREBF2 1 dataset
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
PKNOX2 2 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
RAD21 18 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 111 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 295 bp overlap
ChIP H1 ENCFF698EWO 134 bp overlap
ChIP H1 ENCFF967OJF 119 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 241 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 274 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 141 bp overlap
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 270 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 280 bp overlap
ChIP MDM_H5N1 GSE103477.RAD21.MDM_H5N1 188 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 128 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 279 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 282 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 194 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 250 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 269 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 298 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 419 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 86 bp overlap
SMAD4 1 dataset
ChIP HGrC1_EV GSE138496.SMAD4.HGrC1_EV 159 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 364 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 182 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 150 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 226 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 177 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 177 bp overlap
STAG2 1 dataset
ChIP HL-60 GSE131577.STAG2.HL-60 91 bp overlap
TGIF1 2 datasets
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
TGIF2 2 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 109 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 116 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 189 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF770 2 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZSCAN4 3 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
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