chr4 : 20,351,459 20,351,944
485 bp 59 TFs 0 linked genes
This 485 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:20,346,459 – 20,356,944
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 284 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 364 bp overlap
ChIP neural cell ENCFF442QNK 288 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 156 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 365 bp overlap
ChIP DE DE-FOXA2-2 271 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXF2 1 dataset
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 125 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 214 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 438 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 331 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 307 bp overlap
ChIP hESC GSE18292.NANOG.hESC 152 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 138 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 326 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 191 bp overlap
RAD21 1 dataset
ChIP neural cell ENCFF564MOT 50 bp overlap
REST 8 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 88 bp overlap
ChIP HEK293 ENCFF073DOT 323 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 378 bp overlap
ChIP Ishikawa ENCFF456OHV 291 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 277 bp overlap
ChIP PFSK-1 ENCFF845VHA 277 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 124 bp overlap
ChIP neural ENCSR000BTV.REST.neural 178 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 181 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 395 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 319 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
ChIP RH4 GSE116344.SOX8.RH4 253 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 166 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 197 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 144 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
ZBTB26 1 dataset
ChIP HEK293 GSE76494.ZBTB26.HEK293 143 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 319 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 196 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap