chr3 : 178,512,881 178,513,221
340 bp 43 TFs 0 linked genes
This 340 bp open chromatin element has no linked target genes and is bound by 43 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:178,507,881 – 178,518,221
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
AR 5 datasets
ChIP LNCaP GSE110655.AR.LNCaP 63 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 171 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 64 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 64 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 64 bp overlap
BRD4 2 datasets
ChIP MM1-S GSE43743.BRD4.MM1-S 271 bp overlap
ChIP SEM GSE83671.BRD4.SEM 340 bp overlap
CEBPA 1 dataset
ChIP SKH1 GSE102697.CEBPA.SKH1 56 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 261 bp overlap
EP300 1 dataset
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 68 bp overlap
ERG 10 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 65 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 136 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 94 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 81 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 155 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 80 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 74 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 57 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 73 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 67 bp overlap
ETV1 2 datasets
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 147 bp overlap
ChIP GIST-T1 GSE80443.ETV1.GIST-T1 55 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 112 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 158 bp overlap
FOS 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 74 bp overlap
FOXA1 3 datasets
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 102 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 121 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 237 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 84 bp overlap
GATA2 4 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 195 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 133 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 123 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 163 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 340 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 340 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 198 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 63 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 136 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 258 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 310 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 101 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 219 bp overlap
KMT2A 1 dataset
ChIP L826 GSE83671.KMT2A.L826 140 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 61 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 82 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 76 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 276 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 85 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 340 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 195 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 340 bp overlap
ChIP GM12878 ENCFF259FWL 203 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 222 bp overlap
POLR2A 1 dataset
ChIP endothelial cell of umbilical vein ENCFF303XUJ 204 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 114 bp overlap
RNF2 2 datasets
ChIP ME-1_Con GSE128771.RNF2.ME-1_Con 112 bp overlap
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 186 bp overlap
RUNX1 8 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 54 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 116 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 143 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 143 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 116 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 83 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 106 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 172 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 294 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 261 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 261 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 210 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 183 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 261 bp overlap
TAL1 3 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 112 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 84 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 82 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 156 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 81 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 69 bp overlap