chr3 : 164,889,952 – 164,890,932

980 bp 58 TFs 0 linked genes

This 980 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 334 bp overlap

Arid3a 2 datasets

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 2 datasets

ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 193 bp overlap

ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 540 bp overlap

CDK6 1 dataset

ChIP KB GSE52469.CDK6.KB 110 bp overlap

CHD8 1 dataset

ChIP T-47D GSE62428.CHD8.T-47D 201 bp overlap

CTCF 2 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 139 bp overlap

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 167 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF274GAT 216 bp overlap

ChIP BLaER1 ENCFF364PUR 416 bp overlap

ERF::NHLH1 1 dataset

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

ESR1 1 dataset

ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 402 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 308 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap

HMBOX1 1 dataset

Motif ES_0h ES_0h-HMBOX1_MA0895.2 7 bp overlap

Irf1 2 datasets

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap

Lhx3 2 datasets

Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap

Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 358 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 333 bp overlap

NCOA1 1 dataset

ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 147 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 112 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 1 dataset

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PBX1 1 dataset

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

PHF19 1 dataset

ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 277 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 286 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 171 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap

Pax7 2 datasets

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

RXR 1 dataset

ChIP LS180 GSE31939.RXR.LS180 124 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP RENVM GSE49404.SOX2.RENVM 221 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 307 bp overlap

SOX4 2 datasets

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

Smad4 1 dataset

Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap

Sox6 2 datasets

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap

TFAP2A 1 dataset

Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap

TFAP2C 1 dataset

Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

USF1 1 dataset

ChIP WA01 ENCSR000BIU.USF1.WA01 167 bp overlap

ZBTB12 1 dataset

Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap

ZBTB26 1 dataset

Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap

ZNF16 1 dataset

Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 151 bp overlap

ZNF582 2 datasets

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap

ZNF680 1 dataset

Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap

ZNF701 1 dataset

Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap

ZNF75D 1 dataset

Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap