chr1 : 65,949,285 – 65,949,573
288 bp 36 TFs 0 linked genes
This 288 bp open chromatin element has no linked target genes and is bound by 36 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:65,944,285 – 65,954,573
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 145 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 234 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 105 bp overlap
BRD4 2 datasets
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 288 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 58 bp overlap
CDK8 2 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 201 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 255 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 155 bp overlap
CEBPA 8 datasets
ChIP SGBS GSE41629.CEBPA.SGBS 215 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 288 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 288 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 288 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 279 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 288 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 275 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 176 bp overlap
CEBPB 5 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 273 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 204 bp overlap
ChIP THP-1_NS1-Pam3csk-0h GSE103477.CEBPB.THP-1_NS1-Pam3csk-0h 173 bp overlap
ChIP THP-1_eGFP-Pam3csk-0h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-0h 231 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 230 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 215 bp overlap
CTCF 63 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 118 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 63 bp overlap
ChIP C4-2B ENCFF821XVN 288 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 56 bp overlap
ChIP GM23338 ENCFF531QOI 84 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 79 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 95 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 225 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 57 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 55 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 53 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 72 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 63 bp overlap
ChIP K562 ENCFF430KTH 234 bp overlap
ChIP LNCAP ENCFF223HIG 128 bp overlap
ChIP LNCAP ENCFF700QXT 120 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 115 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 72 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 66 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 74 bp overlap
ChIP OCI-LY1 ENCFF455ESK 79 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 237 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 71 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 204 bp overlap
ChIP PC-3 ENCFF487TUI 283 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 109 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 58 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 76 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 166 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 102 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 50 bp overlap
ChIP VCaP ENCFF858YQT 288 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 97 bp overlap
ChIP brain ENCFF099ASU 87 bp overlap
ChIP brain ENCFF163BBN 136 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF046GNG 61 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 56 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 244 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF258PHG 79 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 260 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 52 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF359BHR 56 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 83 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 84 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 62 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 263 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 288 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 58 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 92 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 74 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 151 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 84 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 54 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF896AZK 58 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 52 bp overlap
ChIP lung_left_upper-lobe ENCSR799TJD.CTCF.lung_left_upper-lobe 82 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 59 bp overlap
ChIP neuron GSE115407.CTCF.neuron 98 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 144 bp overlap
ChIP transverse colon ENCFF471AZS 66 bp overlap
ChIP transverse colon ENCFF749DPF 192 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 282 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 277 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 126 bp overlap
FOXA1 2 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 166 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 159 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 288 bp overlap
GATA2 2 datasets
ChIP K562 ENCFF830LLA 122 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 190 bp overlap
GATA3 2 datasets
ChIP BE2C GSE65664.GATA3.BE2C 228 bp overlap
ChIP MCF-7 ENCFF352QVM 54 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 270 bp overlap
HOXB13 1 dataset
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 183 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 183 bp overlap
JMJD1C 2 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 168 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 206 bp overlap
MED1 4 datasets
ChIP MOLM-14_Veh GSE124963.MED1.MOLM-14_Veh 162 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 181 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 262 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 263 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 174 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 269 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 141 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 182 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 196 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 172 bp overlap
POLR2A 6 datasets
ChIP suprapubic skin ENCFF083NEJ 281 bp overlap
ChIP transverse colon ENCFF610RWV 288 bp overlap
ChIP vagina ENCFF305NWS 222 bp overlap
ChIP vagina ENCFF384GAB 288 bp overlap
ChIP vagina ENCFF384GAB 288 bp overlap
ChIP vagina ENCFF384GAB 196 bp overlap
PPARG 2 datasets
ChIP ASC GSE21366.PPARG.ASC 170 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 214 bp overlap
RAD21 11 datasets
ChIP GP5D GSE51234.RAD21.GP5D 78 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 84 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 150 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 115 bp overlap
ChIP K562 ENCFF066JWO 51 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 158 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 113 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 288 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 194 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 169 bp overlap
ChIP neural cell ENCFF564MOT 68 bp overlap
RELA 6 datasets
ChIP SGBS GSE64233.RELA.SGBS 185 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 173 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 235 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 173 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 69 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 117 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 117 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 117 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 100 bp overlap
ChIP HeLa_ESCO2-deltaPBMA_ESCO1_siRNA GSE105004.SMC3.HeLa_ESCO2-deltaPBMA_ESCO1_siRNA 155 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 58 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 58 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 61 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 288 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 288 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 165 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 203 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 252 bp overlap
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