chr1 : 64,981,667 – 64,982,002
335 bp 45 TFs 0 linked genes
This 335 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:64,976,667 – 64,987,002
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 261 bp overlap
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 111 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 162 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 89 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 266 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 65 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 71 bp overlap
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 174 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 138 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 137 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 261 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 200 bp overlap
ChIP PC-3 GSE147455.EP300.PC-3 105 bp overlap
ESR1 2 datasets
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 50 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 218 bp overlap
FOXA1 46 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 174 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 335 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 335 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 335 bp overlap
ChIP HepG2 ENCFF207NVJ 219 bp overlap
ChIP HepG2 ENCFF361KNY 257 bp overlap
ChIP HepG2 ENCFF740VZW 72 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 158 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 203 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 122 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 214 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 127 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 221 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 104 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 159 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 198 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 235 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 165 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 283 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 294 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 178 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 335 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 152 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 171 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 176 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 335 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 175 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 108 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 195 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 222 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 140 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 191 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 157 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 181 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 246 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 200 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 262 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 143 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 245 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 206 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 275 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 170 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 170 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 96 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 221 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 201 bp overlap
FOXA2 11 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 335 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 335 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 317 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 301 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 184 bp overlap
ChIP DE DE-FOXA2-1 335 bp overlap
ChIP DE DE-FOXA2-2 335 bp overlap
ChIP HepG2 ENCFF533COJ 249 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 202 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 159 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 335 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 335 bp overlap
ChIP DE DE-GATA4-2 335 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 197 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 335 bp overlap
ChIP DE DE-GATA6-2 335 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 335 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 335 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 335 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 302 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 335 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 129 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 299 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 272 bp overlap
IRF1 3 datasets
ChIP K-562 ENCSR854MCV.IRF1.K-562 53 bp overlap
ChIP PDAC GSE64557.IRF1.PDAC 296 bp overlap
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 70 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 321 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 335 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCSR348JOJ.MTA1.MCF-7 160 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 335 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 137 bp overlap
NFE2L2 2 datasets
ChIP Hep-G2 ENCSR488EES.NFE2L2.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF178DRC 225 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 287 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 173 bp overlap
PGR 1 dataset
ChIP T-47D_VC GSE113607.PGR.T-47D_VC 190 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 197 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 57 bp overlap
RUNX1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 335 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 335 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 335 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 335 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 335 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 335 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 304 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 178 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 193 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 253 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 129 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 145 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 227 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 161 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 283 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 77 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 93 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 148 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 192 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 142 bp overlap
ZNF646 1 dataset
ChIP HepG2 ENCFF141MBP 218 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 72 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 97 bp overlap
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