chr3 : 142,967,512 – 142,967,879
367 bp 59 TFs 2 linked genes
This 367 bp open chromatin element is linked to PAQR9 and PAQR9-AS1 and is bound by 59 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PAQR9 3.8 kb Proximal Proximity
PAQR9-AS1 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:142,962,512 – 142,972,879
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 185 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 60 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 143 bp overlap
ChIP K-562 ENCSR808AKZ.BCOR.K-562 231 bp overlap
ChIP K562 ENCFF343XWA 194 bp overlap
CTCF 30 datasets
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 144 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 89 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 162 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 119 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 99 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 303 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 184 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 157 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 111 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 121 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 182 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 160 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 158 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 136 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 190 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 145 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 335 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 235 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 233 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 143 bp overlap
DMRTA1 1 dataset
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 308 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 253 bp overlap
ChIP K562 ENCFF622HMZ 161 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 150 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 124 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 166 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 335 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 367 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 335 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 327 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 367 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 367 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 159 bp overlap
GMEB1 1 dataset
ChIP K-562 ENCSR928KOR.GMEB1.K-562 231 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 286 bp overlap
ChIP K562 ENCFF744ALD 330 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 245 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 176 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 264 bp overlap
ChIP K562 ENCFF320GSD 335 bp overlap
NFIB 2 datasets
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 249 bp overlap
ChIP K562 ENCFF167YID 157 bp overlap
Nanog 2 datasets
Motif DE_36h DE_36h-Nanog_MA2339.1 7 bp overlap
Motif DE_48h DE_48h-Nanog_MA2339.1 7 bp overlap
PBX1 1 dataset
ChIP A549 ENCFF475JCE 228 bp overlap
PBX2 3 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 300 bp overlap
ChIP K562 ENCFF286KMN 187 bp overlap
ChIP K562 ENCFF385PDC 202 bp overlap
PBX3 2 datasets
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PKNOX1 10 datasets
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCFF589FCY 210 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 288 bp overlap
ChIP HEK293T ENCFF174WDB 251 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 280 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 367 bp overlap
ChIP K562 ENCFF236IUS 367 bp overlap
ChIP MCF-7 ENCFF116OCS 207 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 275 bp overlap
POLR2A 2 datasets
ChIP erythroblast ENCFF498VMR 367 bp overlap
ChIP erythroblast ENCFF498VMR 326 bp overlap
PRDM10 2 datasets
ChIP K-562 ENCSR120MPG.PRDM10.K-562 251 bp overlap
ChIP K562 ENCFF740YLK 332 bp overlap
PRDM9 2 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
RAD21 7 datasets
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP MCF-7 ENCFF694KOM 294 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 173 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 135 bp overlap
ChIP liver ENCFF485PAC 366 bp overlap
RARA::RXRA 1 dataset
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
REST 2 datasets
ChIP K-562 ENCSR137ZMQ.REST.K-562 191 bp overlap
ChIP K562 ENCFF688UKW 367 bp overlap
RFX1 1 dataset
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
RFX7 2 datasets
Motif DE_36h DE_36h-RFX7_MA1554.2 8 bp overlap
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 221 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 367 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 367 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 367 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 367 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 367 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 354 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 367 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 367 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 195 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 293 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 159 bp overlap
STAG1 5 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 224 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF843EBZ 273 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 164 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 142 bp overlap
ZBTB2 3 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 116 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 131 bp overlap
ChIP K562 ENCFF290ESQ 87 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZIM3 2 datasets
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
ZNF189 2 datasets
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
Motif DE_48h DE_48h-ZNF189_MA1725.2 9 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 232 bp overlap
ChIP K562 ENCFF365NXQ 286 bp overlap
ZNF558 1 dataset
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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