chr3 : 111,863,071 111,863,410
339 bp 37 TFs 2 linked genes
This 339 bp open chromatin element is linked to ENSG00000286492 and PHLDB2 and is bound by 37 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000286492 2.3 kb Proximal Proximity
PHLDB2 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:111,858,071 – 111,868,410
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 216 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 258 bp overlap
BRD4 11 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 236 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 339 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 222 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 89 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 172 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 326 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 295 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 277 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 339 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 339 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 339 bp overlap
CDK8 2 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 95 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 59 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 250 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 305 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 228 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 339 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 175 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 82 bp overlap
ChIP DE DE-GATA4-2 176 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 65 bp overlap
ChIP DE DE-GATA6-2 339 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 113 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 204 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 262 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 326 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 287 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 222 bp overlap
MED1 5 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 219 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 339 bp overlap
ChIP cardiomyocyte GSE85628.MED1.cardiomyocyte 276 bp overlap
ChIP cardiomyocyte_1 GSE85628.MED1.cardiomyocyte_1 276 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 173 bp overlap
MYC 3 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 216 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 106 bp overlap
MYCN 5 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 204 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 312 bp overlap
ChIP IMR-5_CD532 GSE78957.MYCN.IMR-5_CD532 135 bp overlap
ChIP IMR-5_DMSO GSE78957.MYCN.IMR-5_DMSO 147 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 161 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 339 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 291 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 301 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 289 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 240 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 239 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 218 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 247 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF773DNG 251 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 193 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 290 bp overlap
RELA 1 dataset
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 151 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 339 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 110 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 324 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 298 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 218 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 191 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 284 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 103 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 148 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 152 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 198 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 169 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 176 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 335 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 303 bp overlap
ZNF281 1 dataset
ChIP HepG2 ENCFF585QNU 200 bp overlap