chr3 : 111,047,111 111,047,323
212 bp 47 TFs 0 linked genes
This 212 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:111,042,111 – 111,052,323
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 212 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 212 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 172 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF833IPY 130 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 121 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 209 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 212 bp overlap
ChIP H1 ENCFF126NLU 212 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 212 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 212 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 212 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 120 bp overlap
ChIP hESC GSE17917.EP300.hESC 127 bp overlap
FOSL2 1 dataset
ChIP NPC GSE122631.FOSL2.NPC 212 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 126 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 175 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 174 bp overlap
JUN 10 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 212 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 212 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 212 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 212 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 212 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 212 bp overlap
ChIP H1 ENCFF621PNP 201 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 212 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 212 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 201 bp overlap
JUND 1 dataset
ChIP H1 ENCFF010YXS 212 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 171 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 152 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 196 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 177 bp overlap
ChIP H1 ENCFF747ZPQ 210 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 212 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 212 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 180 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 212 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 212 bp overlap
ChIP hESC GSE18292.NANOG.hESC 212 bp overlap
NIPBL 1 dataset
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 174 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 18 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 207 bp overlap
ChIP GM23338 ENCFF333SNB 196 bp overlap
ChIP H1 ENCFF698ZAP 123 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 212 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 212 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 212 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 167 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 212 bp overlap
ChIP OSvK GSE81899.POU5F1.OSvK 212 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 81 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 126 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 167 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 212 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 177 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 212 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 181 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 212 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 212 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 212 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 212 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 212 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 145 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 133 bp overlap
SMARCA4 7 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 212 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 170 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 212 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 212 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 212 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 212 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 212 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 212 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 212 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 212 bp overlap
SOX2 10 datasets
ChIP H9 GSE46837.SOX2.H9 192 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 212 bp overlap
ChIP NPC GSE122631.SOX2.NPC 212 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 211 bp overlap
ChIP OSvK GSE81899.SOX2.OSvK 128 bp overlap
ChIP OSvKM GSE81899.SOX2.OSvKM 140 bp overlap
ChIP hESC GSE18292.SOX2.hESC 212 bp overlap
ChIP hESC GSE69479.SOX2.hESC 202 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 212 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 183 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 212 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 140 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 122 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 190 bp overlap
TEAD4 1 dataset
ChIP hESC GSE99202.TEAD4.hESC 170 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 187 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 208 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 183 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 145 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap