chr1 : 61,851,257 – 61,852,125
868 bp 43 TFs 2 linked genes
This 868 bp open chromatin element is linked to PATJ and TM2D1 and is bound by 43 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PATJ 109.2 kb Distal Multiome
TM2D1 126.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:61,846,257 – 61,857,125
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 195 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 50 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPA 3 datasets
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 341 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 229 bp overlap
CEBPD 1 dataset
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
CTCF 90 datasets
ChIP 22Rv1 ENCFF466OXN 93 bp overlap
ChIP 22Rv1 ENCFF466OXN 93 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 152 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 157 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 138 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 90 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 100 bp overlap
ChIP C4-2B ENCFF821XVN 358 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 132 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 208 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 109 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 95 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 98 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 131 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 75 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 139 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 73 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 75 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 345 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 74 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 62 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 63 bp overlap
ChIP HFFc6 ENCFF005CJI 55 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 234 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 85 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 70 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 129 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 87 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 101 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 106 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 52 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 210 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 52 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 94 bp overlap
ChIP NPC GSE115407.CTCF.NPC 145 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 89 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 129 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 83 bp overlap
ChIP Panc1 ENCFF056JQX 262 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 218 bp overlap
ChIP RWPE2 ENCFF911IEE 278 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 67 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 62 bp overlap
ChIP SK-N-SH ENCFF575DMG 62 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 81 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 107 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 85 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 82 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 85 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 65 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 205 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 75 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 107 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 109 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 76 bp overlap
ChIP VCaP ENCFF858YQT 112 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 132 bp overlap
ChIP WTC11 ENCFF658QVH 74 bp overlap
ChIP activated B cell ENCFF418DVI 148 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 50 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 76 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 52 bp overlap
ChIP brain ENCFF163BBN 52 bp overlap
ChIP brain ENCFF163BBN 52 bp overlap
ChIP breast epithelium ENCFF080KNR 64 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 91 bp overlap
ChIP chondrocyte ENCFF134ORZ 137 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 78 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 70 bp overlap
ChIP endothelial cell ENCFF663LIE 160 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 204 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 100 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 107 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 102 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 86 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 84 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 145 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 53 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 282 bp overlap
ChIP neural cell ENCFF335ADI 100 bp overlap
ChIP neural cell ENCFF335ADI 100 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 79 bp overlap
ChIP neuron GSE115407.CTCF.neuron 293 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 83 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 91 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 243 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 181 bp overlap
ChIP thyroid gland ENCFF877DRR 59 bp overlap
ChIP upper lobe of left lung ENCFF170ORD 76 bp overlap
ChIP vagina ENCFF026NYX 68 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 345 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 168 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 212 bp overlap
ChIP DE DE-FOXA2-1 421 bp overlap
ChIP DE DE-FOXA2-2 558 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 259 bp overlap
ChIP DE DE-GATA4-1 724 bp overlap
ChIP DE DE-GATA4-2 769 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 235 bp overlap
GATA6 10 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 124 bp overlap
ChIP DE DE-GATA6-1 662 bp overlap
ChIP DE DE-GATA6-2 770 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 439 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 508 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 364 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 868 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 660 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 593 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 711 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 384 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 160 bp overlap
NFIC::TLX1 1 dataset
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5 GSE30623.NR3C1.LNCaP_1F5 131 bp overlap
POU2F3 1 dataset
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
RAD21 23 datasets
ChIP GP5D GSE51234.RAD21.GP5D 429 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 103 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 247 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 52 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 124 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 225 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 282 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 265 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 268 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 137 bp overlap
ChIP MDM GSE103477.RAD21.MDM 69 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 54 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 100 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 116 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 103 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 63 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 99 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 101 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 143 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 150 bp overlap
ChIP neural cell ENCFF564MOT 106 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 91 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 145 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 300 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 296 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 176 bp overlap
ChIP HEK293 ENCFF711QQB 114 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 670 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 599 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 630 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 362 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 92 bp overlap
SMC3 2 datasets
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 70 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 141 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 483 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 683 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 69 bp overlap
ChIP erythroid GSE67783.STAG1.erythroid 100 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 369 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCFF919OMX 67 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 339 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 99 bp overlap
ZKSCAN1 1 dataset
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 232 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 74 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 180 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 118 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 352 bp overlap
ZNF654 1 dataset
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 128 bp overlap
ZNF770 1 dataset
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 213 bp overlap
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