chr3 : 85,626,706 – 85,626,993

287 bp 64 TFs 0 linked genes

This 287 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

64 transcription factors

BARX2 1 dataset

Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 180 bp overlap

DPF2 2 datasets

ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 287 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 287 bp overlap

Dux 1 dataset

Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 249 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA1 1 dataset

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 287 bp overlap

ChIP DE DE-FOXA2-2 287 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXE1 1 dataset

Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 189 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 211 bp overlap

ChIP DE DE-GATA4-2 287 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 241 bp overlap

ChIP DE DE-GATA6-2 287 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 287 bp overlap

GFI1 1 dataset

Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

Hic1 1 dataset

Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

Irf1 2 datasets

Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 207 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 162 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 285 bp overlap

ChIP GM23338 ENCFF065NZG 83 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 168 bp overlap

ChIP H1 ENCFF747ZPQ 238 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 231 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 220 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 287 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 287 bp overlap

ChIP hESC GSE18292.NANOG.hESC 104 bp overlap

ONECUT1 3 datasets

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ChIP H9 ERP004206.ONECUT1.H9 280 bp overlap

ChIP liver ERP002306.ONECUT1.liver 176 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

POU4F1 1 dataset

Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 267 bp overlap

Prdm5 1 dataset

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

RAD21 1 dataset

ChIP HAP1 GSE152721.RAD21.HAP1 287 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 267 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 287 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 272 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 259 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 259 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 256 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 249 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 259 bp overlap

SMARCA4 4 datasets

ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 73 bp overlap

ChIP BT-16_NoDox GSE71504.SMARCA4.BT-16_NoDox 178 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 281 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 215 bp overlap

SMARCC1 5 datasets

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 111 bp overlap

ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 74 bp overlap

ChIP DE_D1 S10-DE-d1-BAF155-exp1 204 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 287 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 124 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 205 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 246 bp overlap

SS18 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 186 bp overlap

STAT1::STAT2 1 dataset

Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap

Stat2 2 datasets

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 248 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ZNF157 1 dataset

Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap