chr3 : 73,183,265 – 73,183,720

455 bp 62 TFs 1 linked gene

This 455 bp open chromatin element is linked to GPATCH11P1 and is bound by 62 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
GPATCH11P1		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

AR 1 dataset

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 167 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap

CREB1 1 dataset

Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap

CTCF 1 dataset

ChIP GSC23 GSE139416.CTCF.GSC23 262 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF274GAT 175 bp overlap

ChIP BLaER1 ENCFF274GAT 224 bp overlap

DMRT3 1 dataset

Motif DE_60h DE_60h-DMRT3_MA0610.2 7 bp overlap

DMRTA1 1 dataset

Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap

DMRTC2 1 dataset

Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap

DUX4 2 datasets

Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

E2F3 2 datasets

Motif DE_48h DE_48h-E2F3_MA0469.4 14 bp overlap

Motif DE_60h DE_60h-E2F3_MA0469.4 14 bp overlap

E2F6 1 dataset

Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 202 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 2 datasets

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 328 bp overlap

ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 282 bp overlap

FIGLA 2 datasets

Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FLI1 1 dataset

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 165 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 303 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 208 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 417 bp overlap

ChIP DE DE-GATA4-2 431 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 359 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 421 bp overlap

ChIP DE DE-GATA6-2 410 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 375 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 316 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 423 bp overlap

ChIP foregut GSE117136.GATA6.foregut 382 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 268 bp overlap

HIC2 2 datasets

Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap

Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap

IRF3 1 dataset

Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap

NFIA 2 datasets

Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap

Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap

NFIX 2 datasets

Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap

Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap

NFYA 2 datasets

Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap

Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap

NFYC 2 datasets

Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap

Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap

NR1D2 1 dataset

Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap

NR1I2 2 datasets

Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap

Motif DE_60h DE_60h-NR1I2_MA1533.2 15 bp overlap

NR2C1 2 datasets

Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap

Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap

NR2C2 3 datasets

Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap

Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap

Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap

NR3C1 1 dataset

Motif DE_60h DE_60h-NR3C1_MA0113.4 15 bp overlap

NR3C2 1 dataset

Motif DE_60h DE_60h-NR3C2_MA0727.2 15 bp overlap

Nr1H2 2 datasets

Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap

Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap

Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap

Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 147 bp overlap

PAX6 1 dataset

Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap

PGR 1 dataset

Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap

PPARA::RXRA 1 dataset

Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap

PRDM9 1 dataset

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

Pparg::Rxra 1 dataset

Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap

Rarg 2 datasets

Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap

Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap

SIX2 2 datasets

Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap

Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap

SMAD2 1 dataset

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 349 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 313 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 275 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 235 bp overlap

SP5 3 datasets

Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

TBX3 2 datasets

Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap

Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap

THAP1 2 datasets

Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap

Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 251 bp overlap

ZEB1 2 datasets

Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 153 bp overlap

ZNF214 1 dataset

Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap

ZNF416 1 dataset

Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap

ZNF460 2 datasets

Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap

Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap

ZNF582 1 dataset

Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap

ZNF652 1 dataset

Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap

ZNF701 1 dataset

Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap

ZNF770 2 datasets

Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap

Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap

ZSCAN31 1 dataset

Motif DE_60h DE_60h-ZSCAN31_MA1722.2 18 bp overlap