chr3 : 65,466,403 65,466,641
238 bp 50 TFs 0 linked genes
This 238 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:65,461,403 – 65,471,641
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 104 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 196 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 140 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 223 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 122 bp overlap
CTCF 45 datasets
ChIP GM23338 ENCFF531QOI 206 bp overlap
ChIP GM23338 ENCFF772DML 185 bp overlap
ChIP H1 ENCFF230QSV 152 bp overlap
ChIP H1 ENCFF414GZI 179 bp overlap
ChIP H1 ENCFF764RHO 179 bp overlap
ChIP H9 ENCFF152GTF 238 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 177 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 204 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 167 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 210 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 238 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 238 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 166 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 180 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 218 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 238 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 161 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 138 bp overlap
ChIP endodermal cell ENCFF471YCZ 237 bp overlap
ChIP endothelial cell ENCFF663LIE 238 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 215 bp overlap
ChIP hESC GSE20650.CTCF.hESC 150 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 213 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 230 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 217 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 238 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 159 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 238 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 180 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 238 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 120 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 177 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 186 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 200 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 191 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 223 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 164 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 197 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 180 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 224 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 205 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 238 bp overlap
ChIP neural progenitor cell ENCFF420RBO 228 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 238 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 219 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 238 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 158 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 227 bp overlap
ESR1 2 datasets
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 116 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 238 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 224 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 238 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 238 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 238 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 238 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 202 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 238 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 180 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 17 datasets
ChIP H1 ENCFF698EWO 180 bp overlap
ChIP H1 ENCFF967OJF 195 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 123 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 200 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 238 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 238 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 238 bp overlap
ChIP hiPSC_HUES9 GSE106870.RAD21.hiPSC_HUES9 132 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 238 bp overlap
ChIP hiPSC_IB7 GSE106870.RAD21.hiPSC_IB7 210 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 238 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 217 bp overlap
ChIP hiPSC_IID12 GSE106870.RAD21.hiPSC_IID12 114 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 235 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 238 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 238 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 235 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF561IAJ 214 bp overlap
RELB 1 dataset
Motif DE_12h DE_12h-RELB_MA1117.2 7 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 238 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 149 bp overlap
SMC3 1 dataset
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 198 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 228 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 152 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SRF 1 dataset
ChIP H1 ENCFF036PEF 137 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
TP63 1 dataset
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 149 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 187 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap