chr3 : 65,368,876 – 65,369,448
572 bp 51 TFs 3 linked genes
This 572 bp open chromatin element is linked to MAGI1, ADAMTS9, and ADAMTS9-AS2 and is bound by 51 transcription factors.
Linked Genes
3 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MAGI1 669.8 kb Distal Multiome
ADAMTS9 682.5 kb Distal Multiome+HiCAR
ADAMTS9-AS2 684.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:65,363,876 – 65,374,448
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 455 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 252 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 447 bp overlap
ChIP DE DE-FOXA2-2 455 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
GATA1::TAL1 1 dataset
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 450 bp overlap
ChIP DE DE-GATA4-2 572 bp overlap
ChIP foregut GSE117136.GATA4.foregut 360 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 459 bp overlap
ChIP DE DE-GATA6-2 433 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 389 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 315 bp overlap
ChIP foregut GSE117136.GATA6.foregut 396 bp overlap
HIC2 1 dataset
Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap
HNF1A 1 dataset
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
NKX2-2 1 dataset
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
NR1I2 1 dataset
Motif DE_48h DE_48h-NR1I2_MA1533.2 15 bp overlap
NR1I3 1 dataset
Motif DE_48h DE_48h-NR1I3_MA1534.2 8 bp overlap
NR5A1 1 dataset
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
OSR1 1 dataset
Motif DE_48h DE_48h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
POU2F1 1 dataset
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
POU2F3 1 dataset
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
POU5F1B 1 dataset
Motif DE_48h DE_48h-POU5F1B_MA0792.1 9 bp overlap
SIX2 1 dataset
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 328 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 529 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 492 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 459 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 172 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 323 bp overlap
SOX13 1 dataset
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 494 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 572 bp overlap
SOX2 1 dataset
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
SOX21 1 dataset
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Sox1 1 dataset
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Sox3 1 dataset
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Wt1 1 dataset
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZNF24 1 dataset
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF274 1 dataset
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF454 1 dataset
Motif DE_48h DE_48h-ZNF454_MA1712.2 17 bp overlap
ZNF677 1 dataset
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
ZNF8 1 dataset
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
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