chr2 : 235,903,938 – 235,904,796

858 bp 67 TFs 0 linked genes

This 858 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

67 transcription factors

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 407 bp overlap

BRD4 8 datasets

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 451 bp overlap

ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 599 bp overlap

ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 317 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 614 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 373 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 398 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 386 bp overlap

ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 332 bp overlap

CTNNB1 2 datasets

ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 460 bp overlap

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 119 bp overlap

DUX4 1 dataset

ChIP WA01 GSE94322.DUX4.WA01 243 bp overlap

EBF1 2 datasets

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 450 bp overlap

EBF3 1 dataset

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 270 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ERG 1 dataset

ChIP Jurkat GSE49091.ERG.Jurkat 225 bp overlap

ESR1 1 dataset

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 252 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 771 bp overlap

Ebf2 1 dataset

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 461 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 366 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

ChIP TF1 GSE73207.GATA2.TF1 292 bp overlap

GATA6 6 datasets

Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 734 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 858 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 858 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 858 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 858 bp overlap

Gata3 1 dataset

Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 602 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 344 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 393 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 829 bp overlap

MAFF 2 datasets

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

ChIP HepG2 ENCFF452YUT 277 bp overlap

MAFK 2 datasets

ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 187 bp overlap

ChIP HepG2 ENCFF743ZOF 241 bp overlap

MYB 1 dataset

ChIP Jurkat GSE59657.MYB.Jurkat 91 bp overlap

MYC 2 datasets

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 221 bp overlap

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap

MYCN 1 dataset

ChIP RH4 GSE83726.MYCN.RH4 205 bp overlap

MYOG 1 dataset

ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap

Mafb 1 dataset

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 303 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 836 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 335 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 293 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 310 bp overlap

NKX2-2 1 dataset

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

NKX2-5 2 datasets

Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap

ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 191 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 121 bp overlap

NRL 1 dataset

Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap

PAX7 1 dataset

ChIP H9_DOX GSE98976.PAX7.H9_DOX 107 bp overlap

PBX1 1 dataset

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 305 bp overlap

PHOX2B 2 datasets

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 298 bp overlap

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 171 bp overlap

POLR2A 1 dataset

ChIP SK-N-MC ENCFF088IVG 491 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 141 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 724 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 364 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 735 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 484 bp overlap

PRDM14 3 datasets

ChIP NCCIT GSE71675.PRDM14.NCCIT 531 bp overlap

ChIP hESC GSE22767.PRDM14.hESC 410 bp overlap

ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 260 bp overlap

PRDM6 1 dataset

ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 239 bp overlap

RBM22 1 dataset

ChIP K-562 GSE120104.RBM22.K-562 361 bp overlap

REL 1 dataset

Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap

RUNX1 2 datasets

ChIP 697 GSE138031.RUNX1.697 111 bp overlap

ChIP NALM-6 GSE126300.RUNX1.NALM-6 175 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 858 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 820 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 575 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 759 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 571 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 140 bp overlap

SMARCC1 5 datasets

ChIP DE_D1 S10-DE-d1-BAF155-exp1 305 bp overlap

ChIP DE_D1 S10-DE-d1-BAF155-exp1 379 bp overlap

ChIP DE_D1 S15-DE-d1-BAF155-exp1 768 bp overlap

ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 279 bp overlap

ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 184 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 390 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 303 bp overlap

TAL1 1 dataset

ChIP PRIMA5 GSE33850.TAL1.PRIMA5 131 bp overlap

TCF3 1 dataset

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 275 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 3 datasets

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ChIP HEK293 ENCFF513JQN 505 bp overlap

ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 248 bp overlap

TEAD4 1 dataset

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 118 bp overlap

TFAP2E 1 dataset

Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap

TP53 2 datasets

ChIP H9 GSE142050.TP53.H9 572 bp overlap

ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 272 bp overlap

TRPS1 1 dataset

Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap

ZBTB6 1 dataset

ChIP HEK293 GSE76494.ZBTB6.HEK293 165 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF692 1 dataset

Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap