chr2 : 225,667,603 – 225,667,751

148 bp 56 TFs 0 linked genes

This 148 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 148 bp overlap

BARX1 1 dataset

Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 148 bp overlap

CTCF 3 datasets

ChIP HT-1080 GSE135580.CTCF.HT-1080 148 bp overlap

ChIP PC-9 ENCFF539ULB 148 bp overlap

ChIP keratinocyte GSE154221.CTCF.keratinocyte 148 bp overlap

DLX1 1 dataset

Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap

DPRX 1 dataset

Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap

Dlx2 1 dataset

Motif ES_0h ES_0h-Dlx2_MA0885.3 8 bp overlap

Dlx3 1 dataset

Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap

Dlx5 1 dataset

Motif ES_0h ES_0h-Dlx5_MA1476.3 8 bp overlap

FLI1 1 dataset

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 118 bp overlap

GBX2 1 dataset

Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap

HAND2 1 dataset

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

HESX1 1 dataset

Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap

ISL2 1 dataset

Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap

JUN 7 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 148 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 148 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 148 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 148 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 148 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 148 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 148 bp overlap

JUND 3 datasets

Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap

ChIP H1 ENCFF010YXS 148 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 148 bp overlap

LBX2 1 dataset

Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap

LHX2 2 datasets

Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap

ChIP retina_pigment GSE60024.LHX2.retina_pigment 145 bp overlap

MEIS1 1 dataset

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif ES_0h ES_0h-MEIS2_MA0774.1 8 bp overlap

MEIS3 1 dataset

Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 57 bp overlap

MSX1 1 dataset

Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 110 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 148 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 148 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 139 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 148 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 148 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap

ChIP hESC GSE18292.NANOG.hESC 109 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 140 bp overlap

Nobox 1 dataset

Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap

POU1F1 1 dataset

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F1::SOX2 1 dataset

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 13 datasets

ChIP GM23338 ENCFF333SNB 148 bp overlap

ChIP H1 ENCFF698ZAP 97 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 148 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 148 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 148 bp overlap

ChIP OSvKM GSE81899.POU5F1.OSvKM 145 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 148 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 148 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 114 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 148 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 148 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 141 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 148 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

Pou5f1::Sox2 1 dataset

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAX 1 dataset

Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap

SMARCA4 3 datasets

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 148 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 148 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 148 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 146 bp overlap

SMARCC1 2 datasets

ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 148 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 148 bp overlap

SOX12 1 dataset

Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap

SOX14 1 dataset

Motif ES_0h ES_0h-SOX14_MA1562.2 9 bp overlap

SOX18 1 dataset

Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap

SOX2 7 datasets

ChIP HNSC GSE69479.SOX2.HNSC 148 bp overlap

ChIP OSKM GSE81899.SOX2.OSKM 148 bp overlap

ChIP hESC GSE69479.SOX2.hESC 128 bp overlap

ChIP hESC GSE18292.SOX2.hESC 108 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 148 bp overlap

ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 148 bp overlap

ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 148 bp overlap

STAT1 1 dataset

Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap

VENTX 1 dataset

Motif ES_0h ES_0h-VENTX_MA0724.1 9 bp overlap