chr2 : 223,190,193 – 223,191,157
964 bp 75 TFs 1 linked gene
This 964 bp open chromatin element is linked to ACSL3 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ACSL3 329.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:223,185,193 – 223,196,157
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ARNT::HIF1A 2 datasets
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
Ar 1 dataset
Motif DE_48h DE_48h-Ar_MA0007.4 16 bp overlap
CTCF 4 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 206 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP thyroid gland ENCFF631QRY 457 bp overlap
Creb3l2 2 datasets
Motif DE_48h DE_48h-Creb3l2_MA0608.1 9 bp overlap
Motif DE_60h DE_60h-Creb3l2_MA0608.1 9 bp overlap
Crx 3 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 3 datasets
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
ERF::FOXI1 1 dataset
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::SREBF2 1 dataset
Motif DE_60h DE_60h-ERFSREBF2_MA1939.2 16 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 754 bp overlap
ChIP DE DE-FOXA2-2 780 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA1 4 datasets
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 4 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 709 bp overlap
ChIP DE DE-GATA4-2 712 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 921 bp overlap
ChIP DE DE-GATA6-2 756 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 405 bp overlap
GFI1 4 datasets
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
GSC 3 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
IKZF1 1 dataset
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
JDP2 3 datasets
Motif DE_48h DE_48h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
KLF17 2 datasets
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
KLF7 2 datasets
Motif DE_48h DE_48h-KLF7_MA1959.2 8 bp overlap
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
MAF 3 datasets
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 3 datasets
Motif DE_48h DE_48h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 3 datasets
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFG::NFE2L1 3 datasets
Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 3 datasets
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEIS1 6 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MEIS2 3 datasets
Motif DE_48h DE_48h-MEIS2_MA0774.1 8 bp overlap
Motif DE_60h DE_60h-MEIS2_MA0774.1 8 bp overlap
Motif DE_72h DE_72h-MEIS2_MA0774.1 8 bp overlap
MXI1 3 datasets
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYOD1 1 dataset
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
Mafg 3 datasets
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NEUROD1 1 dataset
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_60h DE_60h-NEUROG2_MA0669.1 10 bp overlap
NR3C1 1 dataset
Motif DE_48h DE_48h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_48h DE_48h-NR3C2_MA0727.2 15 bp overlap
Neurod2 1 dataset
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Nfe2l2 3 datasets
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 3 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PAX3 3 datasets
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
Motif DE_72h DE_72h-PAX3_MA0780.1 10 bp overlap
PHOX2A 3 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 3 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 3 datasets
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 530 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 381 bp overlap
PROP1 3 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Pax7 3 datasets
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap
Pgr 1 dataset
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RARA 3 datasets
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RARA::RXRG 3 datasets
Motif DE_48h DE_48h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 3 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 321 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 376 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 411 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 533 bp overlap
SPIC 1 dataset
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
STAT1::STAT2 2 datasets
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
TFEB 3 datasets
Motif DE_48h DE_48h-TFEB_MA0692.2 8 bp overlap
Motif DE_60h DE_60h-TFEB_MA0692.2 8 bp overlap
Motif DE_72h DE_72h-TFEB_MA0692.2 8 bp overlap
TFEC 3 datasets
Motif DE_48h DE_48h-TFEC_MA0871.3 8 bp overlap
Motif DE_60h DE_60h-TFEC_MA0871.3 8 bp overlap
Motif DE_72h DE_72h-TFEC_MA0871.3 8 bp overlap
USF1 3 datasets
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
Motif DE_60h DE_60h-USF1_MA0093.4 10 bp overlap
Motif DE_72h DE_72h-USF1_MA0093.4 10 bp overlap
ZBTB17 3 datasets
Motif DE_48h DE_48h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_60h DE_60h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_72h DE_72h-ZBTB17_MA2102.1 8 bp overlap
ZNF143 2 datasets
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF281 1 dataset
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
ZNF282 3 datasets
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
ZNF317 4 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF652 3 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF766 3 datasets
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact