chr2 : 187,117,536 – 187,117,823
287 bp 61 TFs 0 linked genes
This 287 bp open chromatin element has no linked target genes and is bound by 61 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:187,112,536 – 187,122,823
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 185 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 165 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 213 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CTCF 51 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 279 bp overlap
ChIP A673 ENCFF123WOM 287 bp overlap
ChIP BE2C ENCFF757SRF 279 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 200 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 287 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP H9 ENCFF152GTF 146 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 260 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 210 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 175 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 249 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 189 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 209 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 174 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 204 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 180 bp overlap
ChIP MCF-7 ENCFF139NQI 276 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 273 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 216 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 165 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 181 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 143 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 285 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 275 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 126 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 159 bp overlap
ChIP Panc1 ENCFF056JQX 287 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 155 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 144 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 158 bp overlap
ChIP endodermal cell ENCFF471YCZ 287 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 168 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 171 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 180 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 248 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 150 bp overlap
ChIP neural progenitor cell ENCFF420RBO 163 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 280 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 178 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 204 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 139 bp overlap
FOXA2 1 dataset
ChIP PANC-1 GSE119930.FOXA2.PANC-1 119 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 157 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU5F1 1 dataset
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 254 bp overlap
ChIP MCF-7 ENCFF694KOM 250 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 136 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 230 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 151 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 259 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 123 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 159 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX2 3 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 241 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 274 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 276 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 276 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 124 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 287 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 150 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 187 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 99 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF282 1 dataset
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
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