chr1 : 44,134,442 44,134,897
455 bp 32 TFs 6 linked genes
This 455 bp open chromatin element is linked to 6 target genes and is bound by 32 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
DMAP1 78.8 kb Distal Multiome
CCDC24 142.9 kb Distal Multiome
B4GALT2 155.5 kb Distal Multiome
ATP6V0B 159.7 kb Distal Multiome
ERI3 220.6 kb Distal Multiome
RNF220 270.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:44,129,442 – 44,139,897
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 124 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 353 bp overlap
ChIP K562 ENCFF938UXQ 318 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 370 bp overlap
ChIP K562 ENCFF673OEZ 226 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 132 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 299 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 455 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 440 bp overlap
ChIP DE DE-FOXA2-2 417 bp overlap
GATA1 5 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 153 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 253 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 169 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 167 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 10 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 365 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 114 bp overlap
ChIP K562 ENCFF088XQT 386 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 455 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 185 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 185 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 135 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 177 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 242 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF352QVM 451 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 455 bp overlap
ChIP DE DE-GATA4-2 455 bp overlap
ChIP foregut GSE117136.GATA4.foregut 334 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 455 bp overlap
ChIP DE DE-GATA6-2 454 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 455 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 455 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 426 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 454 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap
ChIP foregut GSE117136.GATA6.foregut 265 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 455 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 202 bp overlap
OTX1 1 dataset
ChIP K562 ENCFF829SLD 305 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 398 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 207 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RELA 1 dataset
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.RELA.HeLa-B2_P65KD_TA_TNFA 100 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 387 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 337 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 388 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 376 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 455 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 321 bp overlap
SMARCA4 2 datasets
ChIP K562 ENCFF316MCJ 392 bp overlap
ChIP K562 ENCFF506JCB 423 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 318 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
TAL1 5 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 280 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 180 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 146 bp overlap
ChIP K562 ENCFF620GMX 178 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 202 bp overlap
ChIP K562 ENCFF931DJY 101 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 92 bp overlap
THRB 1 dataset
ChIP K562 ENCFF620NFN 237 bp overlap
ZEB2 2 datasets
ChIP K562 ENCFF795CMH 431 bp overlap
ChIP K562 ENCFF975RXS 404 bp overlap