chr2 : 144,428,871 – 144,429,371
500 bp 70 TFs 0 linked genes
This 500 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:144,423,871 – 144,434,371
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BARHL1 1 dataset
Motif DE_12h DE_12h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_12h DE_12h-BARHL2_MA0635.2 6 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EOMES 3 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 239 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_24h DE_24h-ETV5FOXO1_MA1947.2 10 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 242 bp overlap
FOXF2 2 datasets
Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap
Motif DE_24h DE_24h-FOXF2_MA0030.2 9 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_24h DE_24h-FOXO1ELK3_MA1955.2 13 bp overlap
Foxj3 2 datasets
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Motif DE_24h DE_24h-Foxj3_MA0851.2 9 bp overlap
GATA1 1 dataset
ChIP erythroblast ENCFF867JAR 56 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 362 bp overlap
ChIP DE DE-GATA4-2 434 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 397 bp overlap
ChIP DE DE-GATA6-2 500 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 500 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 500 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 500 bp overlap
HEXIM1-CDK9 1 dataset
ChIP A-375 GSE68047.HEXIM1-CDK9.A-375 166 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA4 3 datasets
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif DE_24h DE_24h-HOXA4_MA1496.2 7 bp overlap
HOXB4 3 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC4 3 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD4 3 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 364 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MLLT1_FKB 2 datasets
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 77 bp overlap
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 330 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 469 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 458 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 276 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 197 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 218 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 248 bp overlap
POU6F1 3 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 327 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 302 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 394 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 500 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 500 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 365 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 421 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 500 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 500 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 191 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 287 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 3 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 3 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 3 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 3 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 3 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 123 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_24h DE_24h-ZNF85_MA1720.2 12 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 122 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
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