chr2 : 55,610,662 55,611,055
393 bp 34 TFs 2 linked genes
This 393 bp open chromatin element is linked to PPP4R3B and PPP4R3B-DT and is bound by 34 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PPP4R3B 6.6 kb Proximal Proximity
PPP4R3B-DT 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:55,605,662 – 55,616,055
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 7 datasets
ChIP LHSAR_HOXB13 GSE56288.AR.LHSAR_HOXB13 249 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 171 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 233 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 120 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 108 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 142 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 157 bp overlap
ATF4 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 123 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 68 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 393 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 336 bp overlap
ChIP DE DE-FOXA2-2 321 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 136 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
GATA3 3 datasets
ChIP A549 ENCFF226FVV 273 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 230 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 175 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 372 bp overlap
ChIP DE DE-GATA4-2 370 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 233 bp overlap
ChIP DE DE-GATA6-2 376 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 303 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 76 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 393 bp overlap
ChIP K562 ENCFF682FBH 67 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 282 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 331 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR979QYJ.MNT.K-562 114 bp overlap
NR2C1 2 datasets
ChIP K562 ENCFF239KMA 111 bp overlap
ChIP K562 ENCFF239KMA 315 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 164 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 218 bp overlap
POLR2A 8 datasets
ChIP GM12892 ENCFF245LYF 84 bp overlap
ChIP GM12892 ENCFF542ZFO 150 bp overlap
ChIP HL-60 ENCFF321XKE 95 bp overlap
ChIP HepG2 ENCFF350RIU 66 bp overlap
ChIP HepG2 ENCFF350RIU 116 bp overlap
ChIP K562 ENCFF214YGX 393 bp overlap
ChIP K562 ENCFF215CWW 291 bp overlap
ChIP K562 ENCFF215CWW 260 bp overlap
RBM22 1 dataset
ChIP K-562 ENCSR848AOP.RBM22.K-562 166 bp overlap
RCOR2 1 dataset
ChIP HepG2 ENCFF310RFX 71 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 259 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 80 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 336 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 289 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 241 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 178 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 142 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 192 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 237 bp overlap
ZMYM3 1 dataset
ChIP K562 ENCFF361LXT 62 bp overlap
ZNF384 2 datasets
ChIP K562 ENCFF365NXQ 297 bp overlap
ChIP K562 ENCFF365NXQ 111 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 121 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF233UVH 210 bp overlap