chrX : 69,501,466 – 69,501,930
464 bp 54 TFs 1 linked gene
This 464 bp open chromatin element is linked to NALF2 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NALF2 2.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:69,496,466 – 69,506,930
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
CHD2 2 datasets
ChIP H1 ENCFF991MKH 299 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 227 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 243 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE76893.ESR1.MCF-7 188 bp overlap
FOS 2 datasets
ChIP Hep-G2 ENCSR177HDZ.FOS.Hep-G2 188 bp overlap
ChIP K-562 ENCSR000FAI.FOS.K-562 139 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 126 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 331 bp overlap
ChIP DE DE-GATA4-2 351 bp overlap
ChIP foregut GSE117136.GATA4.foregut 391 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 364 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 296 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 309 bp overlap
ChIP DE DE-GATA6-2 329 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 337 bp overlap
ChIP foregut GSE117136.GATA6.foregut 359 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 304 bp overlap
GFI1 2 datasets
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
Gfi1B 2 datasets
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 388 bp overlap
HOXB13 2 datasets
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
MBD2 1 dataset
ChIP K-562 ENCSR221GAN.MBD2.K-562 134 bp overlap
MED1 1 dataset
ChIP K-562 GSE97661.MED1.K-562 109 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 249 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 187 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 155 bp overlap
NFIA 3 datasets
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIX 3 datasets
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
NFYA 6 datasets
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 175 bp overlap
ChIP Hep-G2 ENCSR124APT.NFYA.Hep-G2 321 bp overlap
ChIP HepG2 ENCFF883OMO 223 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 276 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 230 bp overlap
ChIP K562 ENCFF666BET 288 bp overlap
NFYB 12 datasets
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
ChIP GM12878 ENCFF474DNH 358 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 249 bp overlap
ChIP HeLa-S3 ENCFF854TNJ 340 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 213 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 464 bp overlap
ChIP HepG2 ENCFF174VYX 297 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 270 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 355 bp overlap
ChIP K562 ENCFF709RXX 175 bp overlap
ChIP WTC11 ENCFF751ZTQ 315 bp overlap
NFYC 2 datasets
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 394 bp overlap
ChIP HepG2 ENCFF836FYP 297 bp overlap
NIPBL 1 dataset
ChIP HEK293T_CRISPR-2 GSE122299.NIPBL.HEK293T_CRISPR-2 281 bp overlap
Nr2e1 1 dataset
Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap
PAX1 2 datasets
Motif DE_60h DE_60h-PAX1_MA0779.2 16 bp overlap
Motif DE_72h DE_72h-PAX1_MA0779.2 16 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 161 bp overlap
PAX9 3 datasets
Motif DE_60h DE_60h-PAX9_MA0781.2 16 bp overlap
Motif DE_72h DE_72h-PAX9_MA0781.2 16 bp overlap
Motif DE_72h DE_72h-PAX9_MA0781.2 16 bp overlap
PBX1 3 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 297 bp overlap
ChIP A549 ENCFF475JCE 183 bp overlap
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 335 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 159 bp overlap
PBX2 3 datasets
ChIP Hep-G2 ENCSR849DFF.PBX2.Hep-G2 333 bp overlap
ChIP HepG2 ENCFF225AJT 250 bp overlap
ChIP K-562 ENCSR633EIC.PBX2.K-562 141 bp overlap
PBX3 9 datasets
ChIP A-549 ENCSR000BTN.PBX3.A-549 147 bp overlap
ChIP A549 ENCFF277EQG 282 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 177 bp overlap
ChIP SK-N-SH ENCFF876BMC 183 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 159 bp overlap
PKNOX1 12 datasets
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCFF589FCY 351 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 399 bp overlap
ChIP HEK293T ENCFF174WDB 400 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 464 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 418 bp overlap
ChIP K562 ENCFF236IUS 406 bp overlap
ChIP MCF-7 ENCFF116OCS 417 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 412 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 234 bp overlap
ChIP K562 ENCFF248CGR 305 bp overlap
ChIP K562 ENCFF957ORK 305 bp overlap
REST 5 datasets
ChIP LNCaP GSE119385.REST.LNCaP 247 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 464 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 273 bp overlap
ChIP neural ENCSR000BTV.REST.neural 57 bp overlap
ChIP neural ENCSR000BTV.REST.neural 171 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 204 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 240 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 73 bp overlap
ChIP NPC GSE122631.SOX2.NPC 53 bp overlap
SP1 8 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 226 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 119 bp overlap
ChIP H1 ENCFF263FUH 186 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 202 bp overlap
ChIP HCT116 ENCFF800LBN 352 bp overlap
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 201 bp overlap
ChIP HepG2 ENCFF123KAM 325 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 259 bp overlap
SP2 6 datasets
ChIP H1 ENCFF903ACN 322 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 376 bp overlap
ChIP Hep-G2 ENCSR000BOU.SP2.Hep-G2 167 bp overlap
ChIP HepG2 ENCFF667RFH 237 bp overlap
ChIP K-562 ENCSR000BNL.SP2.K-562 195 bp overlap
ChIP WA01 ENCSR000BQG.SP2.WA01 218 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 108 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 101 bp overlap
TBX18 2 datasets
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX21 2 datasets
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TP63 1 dataset
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 51 bp overlap
Tbx6 2 datasets
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB26 1 dataset
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZIM3 1 dataset
Motif DE_72h DE_72h-ZIM3_MA1709.2 11 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF454 1 dataset
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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