chrX : 28,324,254 – 28,324,723

469 bp 71 TFs 0 linked genes

This 469 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

71 transcription factors

BCOR 4 datasets

ChIP WA01 GSE104690.BCOR.WA01 458 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 388 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 389 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 469 bp overlap

CTNNB1 2 datasets

ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 337 bp overlap

ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 342 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_12h DE_12h-Ddit3Cebpa_MA0019.2 10 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOS 1 dataset

Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap

FOS::JUN 1 dataset

Motif DE_12h DE_12h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 1 dataset

Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap

FOSL1::JUN 1 dataset

Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL1::JUND 1 dataset

Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap

FOSL2 1 dataset

Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap

FOSL2::JUN 1 dataset

Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif DE_12h DE_12h-FOSL2JUND_MA1144.2 9 bp overlap

GATA6 4 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 335 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 371 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 386 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 376 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

JUN 7 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 435 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 469 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 469 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 461 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 455 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 469 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 469 bp overlap

JUNB 1 dataset

Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap

JUND 2 datasets

Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap

ChIP WA01 ENCSR000EBZ.JUND.WA01 191 bp overlap

Jun 1 dataset

Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MEF2A 1 dataset

Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap

MEF2C 1 dataset

Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NANOG 9 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 362 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 469 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 405 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 469 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 469 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 469 bp overlap

ChIP hESC GSE20650.NANOG.hESC 252 bp overlap

ChIP hESC GSE18292.NANOG.hESC 126 bp overlap

NIPBL 3 datasets

ChIP WA09 GSE105028.NIPBL.WA09 300 bp overlap

ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 425 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 251 bp overlap

Nanog 1 dataset

Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 435 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 398 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU5F1 8 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 469 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 385 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 229 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 143 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 469 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 469 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 321 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 186 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 469 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Prdm14 1 dataset

Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap

RNF2 3 datasets

ChIP WA01 GSE104690.RNF2.WA01 204 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 469 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 428 bp overlap

RXRA 1 dataset

ChIP WA01 ENCSR000BJW.RXRA.WA01 176 bp overlap

SMAD2 1 dataset

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 469 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 358 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 469 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 352 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 376 bp overlap

SMARCA4 3 datasets

ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 464 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 469 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 335 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 300 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 318 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 286 bp overlap

SOX13 1 dataset

Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap

SOX2 2 datasets

Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 260 bp overlap

SOX9 1 dataset

Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Smad4 1 dataset

Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap

Sox3 1 dataset

Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap

Stat6 1 dataset

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 434 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 375 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ZBTB24 1 dataset

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF143 2 datasets

ChIP WA09 GSE105028.ZNF143.WA09 223 bp overlap

ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 191 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZSCAN31 1 dataset

Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap

Zfx 1 dataset

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap