chrX : 17,559,855 17,560,001
146 bp 47 TFs 0 linked genes
This 146 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:17,554,855 – 17,565,001
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 146 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 54 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 95 bp overlap
BRD4 4 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 146 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 129 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 129 bp overlap
ChIP PC-3 GSE137207.BRD4.PC-3 146 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 63 bp overlap
CTCF 14 datasets
ChIP C4-2B ENCFF821XVN 146 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 56 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 56 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 122 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 146 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 130 bp overlap
ChIP PC-3 ENCFF487TUI 146 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 99 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 109 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 104 bp overlap
ChIP brain ENCFF163BBN 116 bp overlap
ChIP chondrocyte ENCFF134ORZ 106 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 57 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 75 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 120 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 146 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 146 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 146 bp overlap
EP300 1 dataset
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 84 bp overlap
FOXA1 11 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 124 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 146 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 146 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 146 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 142 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 146 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 115 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 146 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 146 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 146 bp overlap
ChIP prostate_tumor_tissue3 GSE114385.FOXA1.prostate_tumor_tissue3 137 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 146 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 146 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 146 bp overlap
ChIP DE DE-FOXA2-1 146 bp overlap
ChIP DE DE-FOXA2-2 146 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 146 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 146 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 52 bp overlap
ChIP DE DE-GATA4-1 146 bp overlap
ChIP DE DE-GATA4-2 146 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 146 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 146 bp overlap
ChIP DE DE-GATA6-2 146 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 129 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 142 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 146 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 146 bp overlap
ChIP foregut GSE117136.GATA6.foregut 146 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 111 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 110 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 60 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 146 bp overlap
MED1 2 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 76 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 67 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 146 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 146 bp overlap
NR3C1 3 datasets
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 123 bp overlap
ChIP HCC1937 GSE152203.NR3C1.HCC1937 137 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 104 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 146 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 146 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 146 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 96 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 146 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 86 bp overlap
RAD21 5 datasets
ChIP HCT116 ENCFF568PEO 55 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 146 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 118 bp overlap
ChIP MCF-7 ENCFF694KOM 55 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 89 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 146 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 86 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 146 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 146 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 146 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 76 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 146 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 146 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 100 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 83 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 83 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 83 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 50 bp overlap
SPI1 6 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 129 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 78 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 99 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 146 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 117 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 113 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 146 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 146 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 64 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 92 bp overlap
TEAD4 1 dataset
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 146 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 107 bp overlap
TRIM28 6 datasets
ChIP HEK293 ENCFF265CEM 146 bp overlap
ChIP HEK293 ENCFF582MWI 146 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 146 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 85 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 76 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 65 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 146 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 146 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 135 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 146 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 146 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 146 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 72 bp overlap
ZNF37A 1 dataset
ChIP HEK293 ENCFF953IYO 75 bp overlap