chr19 : 33,085,577 – 33,086,032
455 bp 38 TFs 1 linked gene
This 455 bp open chromatin element is linked to GPATCH1 and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GPATCH1 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:33,080,577 – 33,091,032
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
AR 24 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 133 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 271 bp overlap
ChIP DU145 GSE47987.AR.DU145 169 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 197 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 180 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 244 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 198 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 196 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 170 bp overlap
ChIP LNCaP_SHFOXA1_RPMIFBS GSE69043.AR.LNCaP_SHFOXA1_RPMIFBS 150 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 102 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 241 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 159 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 178 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 181 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 62 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 117 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 158 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 125 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 105 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 123 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 126 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 105 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 171 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 313 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 369 bp overlap
CLOCK 2 datasets
ChIP BA10_2 GSE96659.CLOCK.BA10_2 114 bp overlap
ChIP U2OS GSE44236.CLOCK.U2OS 250 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 113 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 246 bp overlap
ChIP BLaER1 ENCFF364PUR 53 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 455 bp overlap
ChIP MCF-7 ENCFF692OYJ 274 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 311 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 78 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 159 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 144 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 215 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 253 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 61 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 100 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 67 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 267 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 137 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 137 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 249 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 190 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 238 bp overlap
GATA3 15 datasets
ChIP Jurkat GSE29180.GATA3.Jurkat 374 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 307 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 299 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 265 bp overlap
ChIP MCF-7 ENCFF178GBS 369 bp overlap
ChIP MCF-7 ENCFF352QVM 194 bp overlap
ChIP MCF-7 ENCFF437NQS 155 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 391 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 328 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 193 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 178 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 145 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 150 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 213 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 271 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 452 bp overlap
ChIP DE DE-GATA4-2 455 bp overlap
GATA6 8 datasets
ChIP AGS GSE51705.GATA6.AGS 158 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 142 bp overlap
ChIP DE DE-GATA6-1 338 bp overlap
ChIP DE DE-GATA6-2 455 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 455 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 432 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 455 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 441 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 284 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 214 bp overlap
HNF4G 1 dataset
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 68 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 103 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 257 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 330 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 324 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 240 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 178 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 170 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 268 bp overlap
NEUROG2 2 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 271 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 112 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 305 bp overlap
NR3C1 7 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 171 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 141 bp overlap
ChIP MCF-7 GSE104399.NR3C1.MCF-7 120 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 54 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 167 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 155 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 73 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 142 bp overlap
PGR 13 datasets
ChIP AB32 GSE31129.PGR.AB32 123 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 260 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 213 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 198 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 67 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 114 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 189 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 191 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 175 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 187 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 119 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 113 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 57 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 275 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 263 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 248 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 129 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 229 bp overlap
ChIP MCF-7_jc5846 GSE126004.STAT3.MCF-7_jc5846 63 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 215 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 128 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 146 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 148 bp overlap
ZNF664 2 datasets
ChIP HEK293 ENCFF343XSW 362 bp overlap
ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 288 bp overlap
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