chr1 : 246,355,427 246,355,821
394 bp 57 TFs 0 linked genes
This 394 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,350,427 – 246,360,821
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 184 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BRD4 1 dataset
ChIP LPS141 GSE111253.BRD4.LPS141 275 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 223 bp overlap
CTCF 58 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 66 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 75 bp overlap
ChIP BE2C ENCFF757SRF 139 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 77 bp overlap
ChIP Calu3 ENCFF526MDS 300 bp overlap
ChIP DND-41 ENCFF913MRA 99 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 77 bp overlap
ChIP GM12878 ENCFF511URZ 62 bp overlap
ChIP GM23338 ENCFF531QOI 84 bp overlap
ChIP GM23338 ENCFF772DML 100 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 272 bp overlap
ChIP H1 ENCFF230QSV 66 bp overlap
ChIP H1 ENCFF414GZI 89 bp overlap
ChIP H1 ENCFF764RHO 119 bp overlap
ChIP H9 ENCFF152GTF 129 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 87 bp overlap
ChIP HCT116 ENCFF003KHP 106 bp overlap
ChIP HCT116 ENCFF209YMI 106 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HFF-Myc ENCFF680WYR 175 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 79 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 141 bp overlap
ChIP HepG2 ENCFF127KUP 138 bp overlap
ChIP HepG2 ENCFF348BUL 88 bp overlap
ChIP HepG2 ENCFF757EKU 154 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 69 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 125 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 90 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 90 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 97 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 58 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 100 bp overlap
ChIP Loucy ENCFF359TVQ 228 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 53 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 62 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 62 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 55 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 64 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 70 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 133 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 93 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 92 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 93 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 109 bp overlap
ChIP chondrocyte ENCFF134ORZ 67 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 119 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 51 bp overlap
ChIP endodermal cell ENCFF471YCZ 130 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 109 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 51 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 123 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 91 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 132 bp overlap
ChIP neural progenitor cell ENCFF581WPG 94 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 73 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 181 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 75 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 80 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 76 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 69 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 394 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 394 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 337 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 394 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 179 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 107 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 81 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 222 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 199 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 236 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 103 bp overlap
ChIP H1 ENCFF967OJF 119 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 72 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 394 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 95 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 351 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 394 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 394 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 330 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 394 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 371 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 358 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 249 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 394 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 393 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 154 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 105 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 302 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 387 bp overlap
ChIP HEK293 ENCFF033NQQ 268 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 159 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 306 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap