chr16 : 12,775,760 12,776,224
464 bp 45 TFs 2 linked genes
This 464 bp open chromatin element is linked to CPPED1 and SHISA9 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CPPED1 27.9 kb Distal Multiome
SHISA9 125.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:12,770,760 – 12,781,224
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 397 bp overlap
ChIP K562 ENCFF492SKF 464 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 52 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 352 bp overlap
ChIP K562 ENCFF938UXQ 375 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 380 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 278 bp overlap
ChIP K562 ENCFF673OEZ 325 bp overlap
CCNT2 1 dataset
ChIP K-562 ENCSR000DOA.CCNT2.K-562 204 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 146 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 449 bp overlap
EP300 3 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 136 bp overlap
ChIP SK-N-SH ENCFF829RWA 357 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 369 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 196 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 379 bp overlap
ChIP DE DE-FOXA2-2 333 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 163 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 187 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 82 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 320 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 205 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 168 bp overlap
ChIP K562 ENCFF094CMK 242 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 339 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 141 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 417 bp overlap
ChIP K562 ENCFF830LLA 440 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 183 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 344 bp overlap
ChIP SK-N-SH ENCFF764OZD 329 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 350 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 256 bp overlap
GATA3 3 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 443 bp overlap
ChIP SH-SY5Y ENCFF475HYF 390 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 378 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 464 bp overlap
ChIP DE DE-GATA4-2 464 bp overlap
ChIP foregut GSE117136.GATA4.foregut 258 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 464 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 464 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 464 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 464 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 464 bp overlap
ChIP foregut GSE117136.GATA6.foregut 389 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 356 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 376 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 252 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 212 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 464 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 254 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 458 bp overlap
ChIP K562 ENCFF348IBL 464 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 213 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 330 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 169 bp overlap
ChIP K562 ENCFF464PIV 220 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 238 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 280 bp overlap
ChIP K562 ENCFF320GSD 210 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 208 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 201 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 253 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 323 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 191 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 315 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 241 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 311 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 446 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 372 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 268 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 464 bp overlap
SRF 3 datasets
ChIP Hep-G2 ENCSR000BLV.SRF.Hep-G2 107 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 198 bp overlap
ChIP K562 ENCFF766EOO 391 bp overlap
TAL1 6 datasets
ChIP K-562 GSE107726.TAL1.K-562 216 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 183 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 185 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 153 bp overlap
ChIP K562 ENCFF661CCK 258 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 230 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 184 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 92 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 211 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 211 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 126 bp overlap
ChIP K562 ENCFF255RZG 177 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 181 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 174 bp overlap
ChIP K562 ENCFF361LXT 209 bp overlap