chr15 : 99,153,040 99,153,478
438 bp 52 TFs 3 linked genes
This 438 bp open chromatin element is linked to SYNM, TTC23, and LRRC28 and is bound by 52 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SYNM 48.2 kb Distal Multiome
TTC23 96.3 kb Distal Multiome
LRRC28 98.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:99,148,040 – 99,158,478
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 66 bp overlap
BARX2 1 dataset
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 290 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 213 bp overlap
FOXA1 1 dataset
ChIP liver ERP002306.FOXA1.liver 175 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 438 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
ChIP liver ENCFF877SFI 338 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 161 bp overlap
FOXA3 1 dataset
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXI1 1 dataset
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
FOXP1 1 dataset
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 372 bp overlap
ChIP DE DE-GATA4-2 358 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 268 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 275 bp overlap
ChIP DE DE-GATA6-2 305 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 313 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 438 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 438 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 356 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 348 bp overlap
HMBOX1 1 dataset
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
HNF1A 1 dataset
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 159 bp overlap
ChIP liver ENCFF449HPV 401 bp overlap
ChIP liver ERP002306.HNF4A.liver 166 bp overlap
HOXC11 1 dataset
Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
Hand1 1 dataset
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 299 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 438 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 335 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 184 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 225 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 205 bp overlap
POU6F1 1 dataset
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
RFX4 1 dataset
Motif DE_48h DE_48h-RFX4_MA0799.3 13 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 392 bp overlap
SMAD2 2 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 245 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 414 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 438 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 419 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 438 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 438 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 438 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 438 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 192 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 236 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 438 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 177 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 285 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 202 bp overlap
TBX19 1 dataset
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBXT 1 dataset
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
TFEB 1 dataset
Motif DE_48h DE_48h-TFEB_MA0692.2 8 bp overlap
USF1 1 dataset
Motif DE_48h DE_48h-USF1_MA0093.4 10 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 104 bp overlap