chr1 : 233,627,399 – 233,627,760
361 bp 44 TFs 1 linked gene
This 361 bp open chromatin element is linked to KCNK1 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCNK1 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:233,622,399 – 233,632,760
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 220 bp overlap
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 80 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 361 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 230 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 179 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 334 bp overlap
BRD4 5 datasets
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 250 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 73 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 190 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 361 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 200 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 287 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 298 bp overlap
CTCF 9 datasets
ChIP epithelial cell of prostate ENCFF086GTI 361 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 122 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 208 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 320 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 191 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 139 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 161 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 361 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 208 bp overlap
EGR1 4 datasets
ChIP HCT-116 ENCSR000BRZ.EGR1.HCT-116 204 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 185 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 180 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EGR2 2 datasets
ChIP HEK293 ENCFF336LFH 321 bp overlap
ChIP HEK293 ENCFF336LFH 223 bp overlap
ESR1 11 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 279 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 137 bp overlap
ChIP MCF-7_TAMR_E2 GSE86538.ESR1.MCF-7_TAMR_E2 113 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 281 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 222 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 255 bp overlap
ChIP MCF-7_estradiol-aldosterone_4h GSE99626.ESR1.MCF-7_estradiol-aldosterone_4h 169 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 217 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 285 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 172 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 156 bp overlap
EZH2 2 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 63 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 349 bp overlap
FOS 3 datasets
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 201 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 170 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 177 bp overlap
FOSL1 2 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 184 bp overlap
ChIP HCT116 ENCFF540ZXN 293 bp overlap
FOSL2 2 datasets
ChIP MCF-7 ENCFF716UWP 263 bp overlap
ChIP MCF-7 ENCSR000BUI.FOSL2.MCF-7 122 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 311 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 59 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 129 bp overlap
GRHL2 2 datasets
ChIP OVCA429 GSE71018.GRHL2.OVCA429 149 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 112 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 270 bp overlap
JUN 1 dataset
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 254 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 126 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 194 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 197 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 346 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 310 bp overlap
MED1 3 datasets
ChIP MCF-7_SHCTR_E2 GSE60270.MED1.MCF-7_SHCTR_E2 203 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 163 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 246 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 207 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 259 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 130 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 118 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 158 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 313 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 270 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 262 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 160 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 361 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 220 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 181 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 210 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 218 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 192 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 209 bp overlap
SMARCA4 2 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 55 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 317 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 205 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 263 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 361 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 181 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 270 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 181 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 64 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 254 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 106 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 134 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 166 bp overlap
TEAD4 1 dataset
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 167 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 184 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 361 bp overlap
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