chr15 : 51,250,928 – 51,252,124
1,196 bp 52 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:51,245,928 – 51,257,124
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 240 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 147 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 196 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 163 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 148 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 202 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 194 bp overlap
ARID1B 1 dataset
ChIP K-562 ENCSR822CCM.ARID1B.K-562 208 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 335 bp overlap
BCL11A 2 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 79 bp overlap
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 205 bp overlap
BRD4 3 datasets
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 218 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 285 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 197 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 424 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF031ISE 298 bp overlap
ChIP BLaER1 ENCFF896HSY 251 bp overlap
EGR1 1 dataset
ChIP T-HESCs GSE141063.EGR1.T-HESCs 216 bp overlap
ELF1 1 dataset
Motif DE_72h DE_72h-ELF1_MA0473.4 9 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 501 bp overlap
ESR1 5 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 165 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 223 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 342 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 370 bp overlap
ChIP MCF-7_vehicle_45min_H2 GSE99626.ESR1.MCF-7_vehicle_45min_H2 303 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 220 bp overlap
ChIP DE DE-FOXA2-1 863 bp overlap
ChIP DE DE-FOXA2-2 973 bp overlap
Foxq1 1 dataset
Motif DE_72h DE_72h-Foxq1_MA0040.2 10 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 377 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 123 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 161 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 685 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 209 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 89 bp overlap
ChIP DE DE-GATA4-1 827 bp overlap
ChIP DE DE-GATA4-2 1026 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 257 bp overlap
ChIP foregut GSE117136.GATA4.foregut 655 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 712 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 418 bp overlap
GATA6 13 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 102 bp overlap
ChIP DE DE-GATA6-1 155 bp overlap
ChIP DE DE-GATA6-1 970 bp overlap
ChIP DE DE-GATA6-2 1021 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 271 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 727 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 230 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 355 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 410 bp overlap
ChIP foregut GSE117136.GATA6.foregut 817 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 444 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 671 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 430 bp overlap
ISL2 1 dataset
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 318 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 218 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 222 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 275 bp overlap
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 304 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 188 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 106 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 448 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 90 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 192 bp overlap
PGR 3 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 197 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 248 bp overlap
ChIP T-47D-B_E2_R5020 GSE80358.PGR.T-47D-B_E2_R5020 206 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 377 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF309IKZ 331 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 292 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 685 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 588 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 401 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 191 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 243 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 557 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1125 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 390 bp overlap
ChIP K562 ENCFF059YCJ 404 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 184 bp overlap
ChIP K562 ENCFF053XDV 500 bp overlap
ZNF175 1 dataset
ChIP K-562 ENCSR011PEI.ZNF175.K-562 214 bp overlap
ZNF667 1 dataset
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZSCAN21 1 dataset
Motif DE_72h DE_72h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap
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