chr1 : 229,042,134 229,042,413
279 bp 32 TFs 1 linked gene
This 279 bp open chromatin element is linked to ISCA1P2 and is bound by 32 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ISCA1P2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:229,037,134 – 229,047,413
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 168 bp overlap
BRD2 1 dataset
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 150 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 98 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 82 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 217 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 193 bp overlap
ERG 2 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 122 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 110 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 172 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 279 bp overlap
ChIP DE DE-FOXA2-2 279 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 181 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 279 bp overlap
ChIP DE DE-GATA4-2 279 bp overlap
ChIP foregut GSE117136.GATA4.foregut 165 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 279 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 279 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 279 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 279 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 279 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 257 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 150 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 121 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 56 bp overlap
MORC2 1 dataset
ChIP K-562 GSE95374.MORC2.K-562 266 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 133 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 104 bp overlap
RNF2 4 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 234 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 152 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 175 bp overlap
ChIP K562 ENCFF653BQJ 166 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 262 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 279 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 279 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 207 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 134 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 75 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 140 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_ctrl GSE115787.YY1AP1.MCF-10A_ctrl 96 bp overlap
ZNF354B 2 datasets
ChIP K562 ENCFF955JQT 279 bp overlap
ChIP K562 ENCFF955JQT 98 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 118 bp overlap
ChIP K562 ENCFF601EMZ 126 bp overlap
ChIP K562 ENCFF601EMZ 279 bp overlap