chr1 : 223,839,235 223,839,449
214 bp 37 TFs 2 linked genes
This 214 bp open chromatin element is linked to TP53BP2 and ENSG00000288999 and is bound by 37 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TP53BP2 6.3 kb Proximal Proximity
ENSG00000288999 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:223,834,235 – 223,844,449
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP K562 ENCFF728CDS 214 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 211 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 214 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 214 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 130 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 214 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 214 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 214 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 214 bp overlap
ChIP DE DE-FOXA2-2 214 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 182 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 52 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 214 bp overlap
ChIP DE DE-GATA4-2 214 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 198 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 214 bp overlap
ChIP DE DE-GATA6-2 214 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 214 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 214 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 214 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 214 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 214 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 214 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 214 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 168 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 214 bp overlap
ChIP K562 ENCFF317JJX 214 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 174 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 194 bp overlap
KMT2A 2 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 59 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 85 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 139 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 214 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 168 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 120 bp overlap
MZF1 2 datasets
ChIP HEK293 ENCFF683ZWN 214 bp overlap
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 214 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 199 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 108 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 214 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 206 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 166 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 214 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 214 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 197 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 214 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 214 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 214 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 214 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 214 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 202 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 142 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 173 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 86 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 214 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 214 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 214 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 214 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 214 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 214 bp overlap
ChIP HEK293 ENCFF336CWQ 196 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 140 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 214 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 214 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 104 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 164 bp overlap