chr12 : 85,310,147 – 85,310,357
210 bp 37 TFs 1 linked gene
This 210 bp open chromatin element is linked to LINC02820 and is bound by 37 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02820 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:85,305,147 – 85,315,357
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 110 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 180 bp overlap
BRD4 1 dataset
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 210 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 174 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 210 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 210 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 210 bp overlap
CTCF 105 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 210 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 119 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 210 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 142 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 178 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 210 bp overlap
ChIP C4-2B ENCFF821XVN 105 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 105 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 169 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 210 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 134 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 210 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 97 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 134 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 111 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 209 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 172 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 86 bp overlap
ChIP GM12873 ENCFF711LOS 198 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 53 bp overlap
ChIP GM13977 ENCFF528ESQ 70 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 122 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 73 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 100 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 70 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 54 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 66 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 210 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 158 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 151 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 77 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 77 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 55 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 55 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 210 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 210 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 152 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 210 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 210 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 129 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 104 bp overlap
ChIP MCF-7 ENCFF198DQX 194 bp overlap
ChIP MCF-7 ENCFF494VXA 194 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 131 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 97 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 86 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 74 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 70 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 158 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 182 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 72 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 166 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 138 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 80 bp overlap
ChIP RWPE2 ENCFF911IEE 88 bp overlap
ChIP SK-N-SH ENCFF575DMG 93 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 210 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 69 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 127 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 163 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 156 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 80 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 58 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 108 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 152 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 51 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 99 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 127 bp overlap
ChIP WI-38VA13 GSE41048.CTCF.WI-38VA13 77 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 58 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 72 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 209 bp overlap
ChIP chondrocyte ENCFF134ORZ 210 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 73 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 69 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 149 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 64 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 189 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 102 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 92 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 89 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 179 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 210 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 110 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 143 bp overlap
ChIP islet ERP004003.CTCF.islet 143 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 109 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 178 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 82 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 93 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 92 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 68 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 57 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 210 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 210 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 116 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 210 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 210 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 210 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 170 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 190 bp overlap
ChIP spleen ENCSR595BPR.CTCF.spleen 92 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 77 bp overlap
ChIP tibial-artery ENCSR079YAP.CTCF.tibial-artery 68 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 164 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 136 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 205 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 210 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 210 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 209 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 210 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 210 bp overlap
FOXA1 4 datasets
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 195 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 129 bp overlap
ChIP Huh-7_ASYNC GSE39241.FOXA1.Huh-7_ASYNC 166 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 210 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 188 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 109 bp overlap
ChIP DE DE-FOXA2-1 210 bp overlap
ChIP DE DE-FOXA2-2 210 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 204 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 210 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 210 bp overlap
ChIP DE DE-GATA4-2 210 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 191 bp overlap
ChIP foregut GSE117136.GATA4.foregut 210 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 210 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 210 bp overlap
ChIP DE DE-GATA6-2 210 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 210 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 210 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 114 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 188 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 140 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 60 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 210 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 210 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 202 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 169 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 210 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 200 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 210 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 210 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 210 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 172 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 210 bp overlap
POLR2A 1 dataset
ChIP PFSK-1 ENCFF576NIT 186 bp overlap
REST 6 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 210 bp overlap
ChIP HEK293 ENCFF073DOT 210 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 156 bp overlap
ChIP PFSK-1 ENCFF845VHA 210 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 133 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 149 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 210 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 210 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 65 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 65 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 82 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 82 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 70 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 210 bp overlap
TFAP4 1 dataset
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 123 bp overlap
ZNF549 4 datasets
ChIP HEK293 ENCFF528IUI 200 bp overlap
ChIP HEK293 ENCFF565EYY 192 bp overlap
ChIP HEK293 ENCSR185QFX.ZNF549.HEK293 172 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 144 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 179 bp overlap
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