chr1 : 211,416,028 – 211,416,158
130 bp 44 TFs 1 linked gene
This 130 bp open chromatin element is linked to SNX25P1 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SNX25P1 865 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:211,411,028 – 211,421,158
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 130 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 87 bp overlap
BRD2 15 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 86 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 130 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 130 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 130 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 130 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 130 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 130 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 57 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 57 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 130 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 130 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 130 bp overlap
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 98 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 93 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 130 bp overlap
BRD4 12 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 92 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 50 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 130 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 130 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 130 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 130 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 130 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 93 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 92 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 82 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 130 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 68 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 130 bp overlap
CTCF 41 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 130 bp overlap
ChIP B cell ENCFF506FKC 55 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 58 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 52 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 114 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 113 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 88 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 52 bp overlap
ChIP OCI-LY1 ENCFF455ESK 81 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 88 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 61 bp overlap
ChIP Panc1 ENCFF056JQX 130 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 130 bp overlap
ChIP RWPE1 ENCFF200GQF 130 bp overlap
ChIP RWPE2 ENCFF911IEE 130 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 130 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 61 bp overlap
ChIP brain ENCFF163BBN 60 bp overlap
ChIP brain ENCFF685VRG 130 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 51 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 81 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 54 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 91 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 64 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 79 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 58 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 54 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 65 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 130 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 51 bp overlap
ChIP heart left ventricle ENCFF575JEQ 130 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 82 bp overlap
ChIP lower lobe of right lung ENCFF092XHT 61 bp overlap
ChIP nephron ENCFF411ACD 100 bp overlap
ChIP nephron ENCFF589HXU 65 bp overlap
ChIP placenta ENCFF029PHY 67 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 128 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 57 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 100 bp overlap
ChIP spleen ENCFF653ONC 103 bp overlap
ChIP stomach ENCSR185CCV.CTCF.stomach 85 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 126 bp overlap
E2F8 1 dataset
ChIP HepG2 ENCFF117UYU 130 bp overlap
EZH2 1 dataset
ChIP A-673 ENCSR179SAO.EZH2.A-673 130 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 130 bp overlap
FOXA1 4 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 86 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 89 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 58 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 130 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 112 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 108 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 112 bp overlap
ChIP HepG2 ENCFF570ABM 107 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 61 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 57 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 130 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 127 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 84 bp overlap
HOXB13 2 datasets
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 72 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 112 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 95 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 89 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 130 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 97 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE126634.RAD21.HAP1 130 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 124 bp overlap
SKI 1 dataset
ChIP HepG2 ENCFF631IPX 51 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 115 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 74 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 130 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 130 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 130 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 130 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 130 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 85 bp overlap
ZNF146 4 datasets
ChIP HEK293 ENCFF602LWH 91 bp overlap
ChIP HEK293 ENCSR689YFA.ZNF146.HEK293 130 bp overlap
ChIP HepG2 ENCFF383YDA 130 bp overlap
ChIP HepG2 ENCFF383YDA 130 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 127 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 102 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 130 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 130 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 130 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZSCAN5C 1 dataset
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 58 bp overlap
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