chr12 : 63,594,906 – 63,595,179
273 bp 50 TFs 0 linked genes
This 273 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:63,589,906 – 63,600,179
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARNT::HIF1A 3 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
Arnt 3 datasets
Motif DE_36h DE_36h-Arnt_MA0004.1 6 bp overlap
Motif DE_48h DE_48h-Arnt_MA0004.1 6 bp overlap
Motif DE_60h DE_60h-Arnt_MA0004.1 6 bp overlap
BACH1 1 dataset
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOS 2 datasets
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
ChIP MCF-7 ENCFF282FWZ 256 bp overlap
FOS::JUNB 1 dataset
Motif DE_36h DE_36h-FOSJUNB_MA1134.2 9 bp overlap
FOSB::JUNB 1 dataset
Motif DE_36h DE_36h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1::JUNB 1 dataset
Motif DE_36h DE_36h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_36h DE_36h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 1 dataset
Motif DE_36h DE_36h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA1 7 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 130 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 129 bp overlap
ChIP HepG2 ENCFF207NVJ 218 bp overlap
ChIP MCF-7 ENCFF465LTH 231 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 163 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 126 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 145 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 273 bp overlap
ChIP DE DE-FOXA2-2 273 bp overlap
ChIP HepG2 ENCFF570ABM 259 bp overlap
FOXC2 3 datasets
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXE1 3 datasets
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 262 bp overlap
ChIP MCF-7 ENCFF437NQS 169 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 256 bp overlap
ChIP DE DE-GATA4-2 230 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 273 bp overlap
ChIP DE DE-GATA6-2 273 bp overlap
MAX 5 datasets
Motif DE_36h DE_36h-MAX_MA0058.4 6 bp overlap
Motif DE_48h DE_48h-MAX_MA0058.4 6 bp overlap
Motif DE_60h DE_60h-MAX_MA0058.4 6 bp overlap
ChIP HeLa-S3 ENCFF398RFF 273 bp overlap
ChIP MCF-7 ENCFF169IXS 160 bp overlap
MAX::MYC 3 datasets
Motif DE_36h DE_36h-MAXMYC_MA0059.2 10 bp overlap
Motif DE_48h DE_48h-MAXMYC_MA0059.2 10 bp overlap
Motif DE_60h DE_60h-MAXMYC_MA0059.2 10 bp overlap
MNT 4 datasets
Motif DE_36h DE_36h-MNT_MA0825.2 6 bp overlap
Motif DE_48h DE_48h-MNT_MA0825.2 6 bp overlap
Motif DE_60h DE_60h-MNT_MA0825.2 6 bp overlap
ChIP MCF-7 ENCFF144ZFZ 219 bp overlap
MYC 3 datasets
Motif DE_36h DE_36h-MYC_MA0147.4 8 bp overlap
Motif DE_48h DE_48h-MYC_MA0147.4 8 bp overlap
Motif DE_60h DE_60h-MYC_MA0147.4 8 bp overlap
MYCN 3 datasets
Motif DE_36h DE_36h-MYCN_MA0104.5 8 bp overlap
Motif DE_48h DE_48h-MYCN_MA0104.5 8 bp overlap
Motif DE_60h DE_60h-MYCN_MA0104.5 8 bp overlap
Mlxip 3 datasets
Motif DE_36h DE_36h-Mlxip_MA0622.2 6 bp overlap
Motif DE_48h DE_48h-Mlxip_MA0622.2 6 bp overlap
Motif DE_60h DE_60h-Mlxip_MA0622.2 6 bp overlap
NR2F1 2 datasets
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
Motif DE_48h DE_48h-NR2F1_MA1537.2 13 bp overlap
Nfatc2 3 datasets
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Nr2f6 2 datasets
Motif DE_36h DE_36h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_48h DE_48h-Nr2f6_MA0677.2 13 bp overlap
PPARA::RXRA 2 datasets
Motif DE_36h DE_36h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_48h DE_48h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 2 datasets
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
Motif DE_48h DE_48h-PPARD_MA1550.2 14 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 229 bp overlap
PRDM1 2 datasets
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Pparg::Rxra 2 datasets
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 112 bp overlap
RXRB 2 datasets
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
Motif DE_48h DE_48h-RXRB_MA0855.1 14 bp overlap
RXRG 2 datasets
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Motif DE_48h DE_48h-RXRG_MA0856.1 14 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCFF521RDC 273 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
SMARCE1 1 dataset
ChIP MCF-7 ENCFF890MHF 150 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 165 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 273 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 170 bp overlap
TBX19 1 dataset
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_36h DE_36h-TBXT_MA0009.2 16 bp overlap
THRB 2 datasets
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
Motif DE_48h DE_48h-THRB_MA1574.2 13 bp overlap
USF1 1 dataset
ChIP H1 ENCFF090WVU 234 bp overlap
ZNF135 2 datasets
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF24 1 dataset
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF317 2 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
ZNF582 3 datasets
Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF680 1 dataset
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
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